Detailed information NTG0292688

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DKE43_RS14885
• Genome accession: NZ_CP029464
• Coordinates: 2861928..2863040 (+)
• Length: 370 a.a.
• NCBI ID: WP_066031459.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain ZB201701
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2856928..2868040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKE43_RS14860 (DKE43_14920)	rnpA	2857680..2858039 (-)	360	WP_034660668.1	ribonuclease P protein component	-
DKE43_RS14865 (DKE43_14925)	rpmH	2858118..2858252 (-)	135	WP_008360908.1	50S ribosomal protein L34	-
DKE43_RS14870 (DKE43_14930)	dnaA	2858872..2860212 (+)	1341	WP_034660669.1	chromosomal replication initiator protein DnaA	-
DKE43_RS14875 (DKE43_14935)	dnaN	2860409..2861545 (+)	1137	WP_034660670.1	DNA polymerase III subunit beta	-
DKE43_RS14880 (DKE43_14940)	yaaA	2861696..2861911 (+)	216	WP_003215257.1	S4 domain-containing protein YaaA	-
DKE43_RS14885 (DKE43_14945)	recF	2861928..2863040 (+)	1113	WP_066031459.1	DNA replication/repair protein RecF	Machinery gene
DKE43_RS14890 (DKE43_14950)	-	2863058..2863303 (+)	246	WP_008360920.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
DKE43_RS14895 (DKE43_14955)	gyrB	2863361..2865277 (+)	1917	WP_060597746.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
DKE43_RS14900 (DKE43_14960)	gyrA	2865510..2868014 (+)	2505	WP_060597709.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42561.61 Da
• Isoelectric Point: 7.3662

>NTDB_id=292688 DKE43_RS14885 WP_066031459.1 2861928..2863040(+) (recF) [Bacillus pumilus strain ZB201701]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTSIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide

• Length: 1113 bp

>NTDB_id=292688 DKE43_RS14885 WP_066031459.1 2861928..2863040(+) (recF) [Bacillus pumilus strain ZB201701]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACTGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCGGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAGAAATGGGCGCAGCCGTTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACTTCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACACTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	83.469	99.73	0.832