Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BPUM_RS05430 Genome accession   NC_009848
Coordinates   1142869..1143066 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus SAFR-032     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137869..1148066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS05400 (BPUM_1049) - 1138277..1138456 (+) 180 WP_003211282.1 YjzC family protein -
  BPUM_RS05405 (BPUM_1050) - 1138627..1139892 (+) 1266 WP_012009547.1 MFS transporter -
  BPUM_RS05410 (BPUM_1051) - 1140008..1140202 (-) 195 WP_003211779.1 YjzD family protein -
  BPUM_RS05415 (BPUM_1052) - 1140414..1141154 (+) 741 WP_012009548.1 hypothetical protein -
  BPUM_RS05420 (BPUM_1053) - 1141230..1141805 (+) 576 WP_012009549.1 hypothetical protein -
  BPUM_RS05425 (BPUM_1054) med 1141896..1142858 (+) 963 WP_012009550.1 BMP family ABC transporter substrate-binding protein Regulator
  BPUM_RS05430 (BPUM_1055) comZ 1142869..1143066 (+) 198 WP_003211983.1 ComZ family protein Regulator
  BPUM_RS05435 (BPUM_1056) - 1143077..1143310 (-) 234 WP_012009551.1 hypothetical protein -
  BPUM_RS05440 (BPUM_1057) - 1143480..1144418 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  BPUM_RS05445 (BPUM_1058) fabF 1144440..1145681 (+) 1242 WP_012009553.1 beta-ketoacyl-ACP synthase II -
  BPUM_RS05450 (BPUM_1059) - 1145759..1146562 (+) 804 WP_012009554.1 DUF2268 domain-containing protein -
  BPUM_RS05455 (BPUM_1060) - 1146724..1147704 (+) 981 WP_012009555.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=29267 BPUM_RS05430 WP_003211983.1 1142869..1143066(+) (comZ) [Bacillus pumilus SAFR-032]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=29267 BPUM_RS05430 WP_003211983.1 1142869..1143066(+) (comZ) [Bacillus pumilus SAFR-032]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAAGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCTGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTTATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment