Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECIAI39_RS22925 Genome accession   NC_011750
Coordinates   4775770..4776246 (-) Length   158 a.a.
NCBI ID   WP_001537421.1    Uniprot ID   -
Organism   Escherichia coli IAI39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4770770..4781246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI39_RS22885 (ECIAI39_4565) - 4771394..4772607 (+) 1214 WP_165442304.1 IS3 family transposase -
  ECIAI39_RS22890 (ECIAI39_4566) - 4772646..4772873 (-) 228 Protein_4518 hypothetical protein -
  ECIAI39_RS22895 (ECIAI39_4567) - 4772944..4773789 (-) 846 WP_001280513.1 DUF4942 domain-containing protein -
  ECIAI39_RS22900 (ECIAI39_4568) - 4773874..4774071 (-) 198 WP_000839254.1 DUF957 domain-containing protein -
  ECIAI39_RS22905 (ECIAI39_4569) - 4774089..4774577 (-) 489 WP_000761682.1 DUF5983 family protein -
  ECIAI39_RS22910 (ECIAI39_4570) cbtA 4774574..4774951 (-) 378 WP_000854824.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECIAI39_RS22915 - 4775041..4775424 (-) 384 Protein_4523 type IV toxin-antitoxin system YeeU family antitoxin -
  ECIAI39_RS22920 (ECIAI39_4572) - 4775486..4775707 (-) 222 WP_000691817.1 DUF987 domain-containing protein -
  ECIAI39_RS22925 (ECIAI39_4573) radC 4775770..4776246 (-) 477 WP_001537421.1 RadC family protein Machinery gene
  ECIAI39_RS22930 (ECIAI39_4574) - 4776261..4776746 (-) 486 WP_000213700.1 antirestriction protein -
  ECIAI39_RS22935 (ECIAI39_4575) - 4776837..4777655 (-) 819 WP_001175162.1 DUF932 domain-containing protein -
  ECIAI39_RS22940 (ECIAI39_4576) - 4777745..4777978 (-) 234 WP_001278283.1 DUF905 family protein -
  ECIAI39_RS22945 (ECIAI39_4577) - 4777984..4778661 (-) 678 WP_001097301.1 hypothetical protein -
  ECIAI39_RS22950 - 4778809..4779489 (-) 681 WP_001282915.1 WYL domain-containing protein -
  ECIAI39_RS22955 (ECIAI39_4579) - 4779692..4780576 (-) 885 WP_001116799.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=29267 ECIAI39_RS22925 WP_001537421.1 4775770..4776246(-) (radC) [Escherichia coli IAI39]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29267 ECIAI39_RS22925 WP_001537421.1 4775770..4776246(-) (radC) [Escherichia coli IAI39]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment