Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DKE43_RS07170 Genome accession   NZ_CP029464
Coordinates   1377950..1379683 (-) Length   577 a.a.
NCBI ID   WP_060596818.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1372950..1384683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS07150 (DKE43_07170) - 1373829..1374929 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  DKE43_RS07160 (DKE43_07180) spo0A 1375385..1376188 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  DKE43_RS07165 (DKE43_07185) spoIVB 1376474..1377751 (-) 1278 WP_034661244.1 SpoIVB peptidase -
  DKE43_RS07170 (DKE43_07190) recN 1377950..1379683 (-) 1734 WP_060596818.1 DNA repair protein RecN Machinery gene
  DKE43_RS07175 (DKE43_07195) argR 1379717..1380166 (-) 450 WP_034661246.1 transcriptional regulator ArgR -
  DKE43_RS07180 (DKE43_07200) - 1380329..1381183 (-) 855 WP_060596819.1 TlyA family RNA methyltransferase -
  DKE43_RS07185 (DKE43_07205) dxs 1381180..1383081 (-) 1902 WP_060596820.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DKE43_RS07190 (DKE43_07210) - 1383232..1384122 (-) 891 WP_106061665.1 polyprenyl synthetase family protein -
  DKE43_RS07195 (DKE43_07215) - 1384112..1384372 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64717.48 Da        Isoelectric Point: 4.7788

>NTDB_id=292662 DKE43_RS07170 WP_060596818.1 1377950..1379683(-) (recN) [Bacillus pumilus strain ZB201701]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFSI
RYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=292662 DKE43_RS07170 WP_060596818.1 1377950..1379683(-) (recN) [Bacillus pumilus strain ZB201701]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCTGGAAAATCCATCATGATTGACGCAGTCTCACTTCTTGTAGGAGGGAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAAAAAAAGGCAGAGCTGGAGGGGCTTTTTCTTGTGCCAGCCGATCACCCTGTATTTGCTTTATGC
GAAGAGCAGGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGAAAAAGCATCTGCCG
CATCAATGGCAAACTTGTCACGATCTCACTTTTACGCGAGGTAGGACGCCTTTTGCTCGATATACATGGGCAGCACGATA
ACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTGTCA
CAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAGATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTTCAAAACGCATATAATGCCTTGCGCAATGAG
CAGGGAGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAAGCT
ATCCGAACAAGTGTCGAACTCCTATTACTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGTTGGATCAATTAGAGT
TCGACCCAGCACGTCTTGATTTTATTGAATCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATATGGGACAACGGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATAGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTGCAGACGCT
TAAAAACAAACTGGATGCAATGAGCCGTGATGCCCTGCTTGAAGCACTTAACGTTTCAGAGCTTCGTAAAAAATGGGCGA
AAAAACTAGCGAAGCAAATTCAAACAGAACTAAAAGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCCATT
CGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGACCA
AGCTCAATTTGTGATCTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTTCAC
GTGTCATGCTCGCCGTGAAAAGTATTTTCTCAGCCAAACAAGAAGTCACGTCCATTATTTTCGATGAGGTGGATACGGGC
GTAAGCGGCAGAGTGGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTACGCA
CCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCTAAAGCCGGCAGAACACTGACAAGCG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACAAAA
CAGCACGCAAAAGAATTGCTTCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.39

100

0.754

Multiple sequence alignment