Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   DKE43_RS03045 Genome accession   NZ_CP029464
Coordinates   582612..583193 (+) Length   193 a.a.
NCBI ID   WP_034662739.1    Uniprot ID   A0AAE3WHV4
Organism   Bacillus pumilus strain ZB201701     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 577612..588193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS03015 (DKE43_03030) dapD 577720..578430 (+) 711 WP_034662753.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DKE43_RS03020 (DKE43_03035) - 578515..579645 (+) 1131 WP_060596145.1 N-acetyldiaminopimelate deacetylase -
  DKE43_RS03025 (DKE43_03040) - 579696..579938 (+) 243 WP_058014110.1 YkuS family protein -
  DKE43_RS03030 (DKE43_03045) - 579965..580774 (-) 810 WP_060596146.1 mechanosensitive ion channel family protein -
  DKE43_RS03035 (DKE43_03050) ahpA 581047..581589 (+) 543 WP_034662744.1 biofilm-specific peroxidase AhpA -
  DKE43_RS03040 (DKE43_03055) - 581672..582130 (+) 459 WP_034662741.1 TlpA disulfide reductase family protein -
  DKE43_RS03045 (DKE43_03060) rok 582612..583193 (+) 582 WP_034662739.1 hypothetical protein Regulator
  DKE43_RS03050 (DKE43_03065) - 583243..584160 (-) 918 WP_106047733.1 sigmaE regulated sporulation protein -
  DKE43_RS03055 (DKE43_03070) - 584245..584826 (+) 582 WP_060596148.1 molybdenum cofactor guanylyltransferase -
  DKE43_RS03060 (DKE43_03075) - 584856..585872 (+) 1017 WP_060596149.1 thiazole biosynthesis adenylyltransferase ThiF -
  DKE43_RS03065 (DKE43_03080) glp 585882..587159 (+) 1278 WP_060596150.1 gephyrin-like molybdotransferase Glp -
  DKE43_RS03070 (DKE43_03085) mobB 587141..587665 (+) 525 WP_034662725.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  DKE43_RS03075 (DKE43_03090) - 587662..588153 (+) 492 WP_060596151.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21812.80 Da        Isoelectric Point: 9.7309

>NTDB_id=292653 DKE43_RS03045 WP_034662739.1 582612..583193(+) (rok) [Bacillus pumilus strain ZB201701]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNPASSLGTGQLNGVPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=292653 DKE43_RS03045 WP_034662739.1 582612..583193(+) (rok) [Bacillus pumilus strain ZB201701]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAACTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAGACGGATTCGCTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCGGCACAATCACAATCAAATCCTGCATCATCTTTAGGAACAGGACAGCTAAACGGTGTACCTGTAGGTATTCCTGAAGG
ATCTACTAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772

Multiple sequence alignment