Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DKE43_RS02925 Genome accession   NZ_CP029464
Coordinates   564050..564511 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain ZB201701     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 559050..569511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS02905 (DKE43_02920) - 559657..560541 (+) 885 WP_060596138.1 cation diffusion facilitator family transporter -
  DKE43_RS18645 - 560604..560756 (-) 153 WP_162839369.1 hypothetical protein -
  DKE43_RS02910 (DKE43_02925) - 561058..561597 (+) 540 WP_060596139.1 RDD family protein -
  DKE43_RS02915 (DKE43_02930) - 561723..563033 (+) 1311 WP_181185446.1 MFS transporter -
  DKE43_RS02920 (DKE43_02935) - 563107..564015 (+) 909 WP_034662787.1 chemotaxis protein -
  DKE43_RS02925 (DKE43_02940) kre 564050..564511 (-) 462 WP_012009774.1 YkyB family protein Regulator
  DKE43_RS02935 (DKE43_02950) - 565229..565444 (-) 216 WP_003211341.1 hypothetical protein -
  DKE43_RS18650 - 565604..565780 (+) 177 WP_164847174.1 hypothetical protein -
  DKE43_RS02940 (DKE43_02955) - 565845..567122 (-) 1278 WP_034662784.1 MFS transporter -
  DKE43_RS02945 (DKE43_02960) - 567196..567693 (-) 498 WP_060596140.1 L,D-transpeptidase family protein -
  DKE43_RS02950 (DKE43_02965) - 567850..568707 (-) 858 WP_060596141.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=292652 DKE43_RS02925 WP_012009774.1 564050..564511(-) (kre) [Bacillus pumilus strain ZB201701]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=292652 DKE43_RS02925 WP_012009774.1 564050..564511(-) (kre) [Bacillus pumilus strain ZB201701]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment