Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   DKE43_RS02765 Genome accession   NZ_CP029464
Coordinates   527132..529234 (-) Length   700 a.a.
NCBI ID   WP_060596121.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 522132..534234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS02740 (DKE43_02755) - 522720..522962 (+) 243 WP_034662891.1 aspartyl-phosphate phosphatase Spo0E family protein -
  DKE43_RS02745 (DKE43_02760) - 523009..524514 (-) 1506 WP_060596119.1 ATP-binding protein -
  DKE43_RS02750 (DKE43_02765) - 524720..525175 (+) 456 WP_034662884.1 MarR family transcriptional regulator -
  DKE43_RS02755 (DKE43_02770) motB 525205..525969 (-) 765 WP_060596120.1 flagellar motor protein MotB -
  DKE43_RS02760 (DKE43_02775) motA 525962..526756 (-) 795 WP_034662877.1 flagellar motor stator protein MotA -
  DKE43_RS02765 (DKE43_02780) clpC 527132..529234 (-) 2103 WP_060596121.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DKE43_RS02770 (DKE43_02785) - 529478..530521 (+) 1044 WP_106036740.1 hypothetical protein -
  DKE43_RS02775 (DKE43_02790) queC 530797..531453 (+) 657 WP_127686876.1 7-cyano-7-deazaguanine synthase QueC -
  DKE43_RS02780 (DKE43_02795) queD 531454..531894 (+) 441 WP_060596123.1 6-carboxytetrahydropterin synthase QueD -
  DKE43_RS02785 (DKE43_02800) queE 531887..532618 (+) 732 WP_034662862.1 7-carboxy-7-deazaguanine synthase QueE -
  DKE43_RS02790 (DKE43_02805) queF 532634..533131 (+) 498 WP_127686878.1 preQ(1) synthase -
  DKE43_RS02795 (DKE43_02810) - 533402..533620 (+) 219 WP_034662856.1 hypothetical protein -
  DKE43_RS02800 (DKE43_02815) - 533744..533932 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77981.56 Da        Isoelectric Point: 5.0393

>NTDB_id=292651 DKE43_RS02765 WP_060596121.1 527132..529234(-) (clpC) [Bacillus pumilus strain ZB201701]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSVEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAVEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEMDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVS
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDNEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=292651 DKE43_RS02765 WP_060596121.1 527132..529234(-) (clpC) [Bacillus pumilus strain ZB201701]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACGGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAGCTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAACCAACACAAGATGAAGCGGTCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATTGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATGGACGTCCGCTTAAAAGCACGAGTGATCGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATCGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGTCA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.233

100

0.593
  clpE Streptococcus mutans UA159

57.182

100

0.591
  clpE Streptococcus pneumoniae Rx1

55.249

100

0.571
  clpE Streptococcus pneumoniae D39

55.249

100

0.571
  clpE Streptococcus pneumoniae R6

55.249

100

0.571
  clpE Streptococcus pneumoniae TIGR4

55.249

100

0.571
  clpC Bacillus subtilis subsp. subtilis str. 168

53.284

95.714

0.51
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.914

92.571

0.434
  clpC Streptococcus thermophilus LMD-9

45.595

92.429

0.421
  clpC Streptococcus thermophilus LMG 18311

45.44

92.429

0.42
  clpC Streptococcus mutans UA159

43.865

93.143

0.409
  clpC Streptococcus pneumoniae TIGR4

45.064

89.714

0.404
  clpC Streptococcus pneumoniae Rx1

45.265

89

0.403
  clpC Streptococcus pneumoniae D39

45.265

89

0.403

Multiple sequence alignment