Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   DKE43_RS01805 Genome accession   NZ_CP029464
Coordinates   349552..349749 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 344552..354749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS01775 (DKE43_01780) - 344962..345141 (+) 180 WP_034663316.1 YjzC family protein -
  DKE43_RS01780 (DKE43_01785) - 345310..346575 (+) 1266 WP_034663308.1 MFS transporter -
  DKE43_RS01785 (DKE43_01790) - 346694..346888 (-) 195 WP_003211779.1 YjzD family protein -
  DKE43_RS01790 (DKE43_01795) - 347100..347840 (+) 741 WP_060595993.1 hypothetical protein -
  DKE43_RS01795 (DKE43_01800) - 347916..348488 (+) 573 WP_060595994.1 hypothetical protein -
  DKE43_RS01800 (DKE43_01805) med 348579..349541 (+) 963 WP_034663299.1 BMP family ABC transporter substrate-binding protein Regulator
  DKE43_RS01805 (DKE43_01810) comZ 349552..349749 (+) 198 WP_003211983.1 ComZ family protein Regulator
  DKE43_RS01810 (DKE43_01815) - 349759..349992 (-) 234 WP_034663296.1 hypothetical protein -
  DKE43_RS01815 (DKE43_01820) - 350162..351100 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  DKE43_RS01820 (DKE43_01825) fabF 351122..352363 (+) 1242 WP_106048727.1 beta-ketoacyl-ACP synthase II -
  DKE43_RS01825 (DKE43_01830) - 352441..353235 (+) 795 WP_060595996.1 DUF2268 domain-containing protein -
  DKE43_RS01830 (DKE43_01835) - 353404..354384 (+) 981 WP_106156894.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=292644 DKE43_RS01805 WP_003211983.1 349552..349749(+) (comZ) [Bacillus pumilus strain ZB201701]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=292644 DKE43_RS01805 WP_003211983.1 349552..349749(+) (comZ) [Bacillus pumilus strain ZB201701]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
GGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTTG
GGAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment