Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DKE43_RS01430 Genome accession   NZ_CP029464
Coordinates   269964..270914 (+) Length   316 a.a.
NCBI ID   WP_060595944.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 264964..275914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS01410 (DKE43_01415) - 266190..266672 (+) 483 WP_066031075.1 hypothetical protein -
  DKE43_RS01415 (DKE43_01420) - 266704..268143 (-) 1440 WP_066031074.1 PLP-dependent aminotransferase family protein -
  DKE43_RS01420 (DKE43_01425) - 268289..269458 (+) 1170 WP_127686836.1 MFS transporter -
  DKE43_RS01425 (DKE43_01430) - 269523..269798 (+) 276 WP_060595943.1 barstar family protein -
  DKE43_RS01430 (DKE43_01435) ceuB 269964..270914 (+) 951 WP_060595944.1 ABC transporter permease Machinery gene
  DKE43_RS01435 (DKE43_01440) - 270907..271857 (+) 951 WP_044140714.1 iron chelate uptake ABC transporter family permease subunit -
  DKE43_RS01440 (DKE43_01445) - 271848..272606 (+) 759 WP_127686838.1 ATP-binding cassette domain-containing protein -
  DKE43_RS01445 (DKE43_01450) - 272629..273573 (+) 945 WP_095284990.1 siderophore ABC transporter substrate-binding protein -
  DKE43_RS01450 (DKE43_01455) - 273714..274670 (+) 957 WP_127686840.1 LCP family protein -
  DKE43_RS01455 (DKE43_01460) - 274739..275101 (-) 363 WP_060595947.1 hypothetical protein -
  DKE43_RS01460 (DKE43_01465) - 275258..275875 (+) 618 WP_034663493.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34895.26 Da        Isoelectric Point: 9.7476

>NTDB_id=292640 DKE43_RS01430 WP_060595944.1 269964..270914(+) (ceuB) [Bacillus pumilus strain ZB201701]
MKLYQLSLLFVCLACVSLFVGVQDLSILQMFHLTDEQLHTLVSSRIPRLVSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAINLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIVGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=292640 DKE43_RS01430 WP_060595944.1 269964..270914(+) (ceuB) [Bacillus pumilus strain ZB201701]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGATGTTTCATTTAACAGATGAACAATTACATACGTTAGTTTCAAGTCGCATCCCGCGTCTCGTGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGCAGCAATGCTTGTTTTTACACATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGCTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATC
CAAAACGTATCTGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
ACTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCGGGTATGGGTGAGAGCTTTGCCATCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATCGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGAATG
TTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAGAGCCTTCCGCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCGTCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.159

95.253

0.497

Multiple sequence alignment