Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DKE43_RS00440 Genome accession   NZ_CP029464
Coordinates   89578..90369 (+) Length   263 a.a.
NCBI ID   WP_060595806.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 84578..95369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS00405 (DKE43_00410) - 84661..85209 (+) 549 WP_034665029.1 thioredoxin family protein -
  DKE43_RS00410 (DKE43_00415) - 85546..86013 (+) 468 WP_066031146.1 DUF393 domain-containing protein -
  DKE43_RS00415 (DKE43_00420) - 86050..87306 (-) 1257 WP_066031145.1 transcriptional regulator -
  DKE43_RS00420 (DKE43_00425) - 87580..88167 (+) 588 WP_060595825.1 nitroreductase -
  DKE43_RS00425 (DKE43_00430) - 88207..88362 (-) 156 WP_034665021.1 YfhD family protein -
  DKE43_RS00430 (DKE43_00435) - 88424..88534 (-) 111 WP_017358836.1 YfhE family protein -
  DKE43_RS00435 (DKE43_00440) - 88587..89483 (-) 897 WP_060595805.1 TIGR01777 family oxidoreductase -
  DKE43_RS00440 (DKE43_00445) recX 89578..90369 (+) 792 WP_060595806.1 recombination regulator RecX Regulator
  DKE43_RS00445 (DKE43_00450) - 90373..90687 (+) 315 WP_060595807.1 YfhH family protein -
  DKE43_RS00450 (DKE43_00455) - 90820..90993 (-) 174 WP_003217811.1 YpzG family protein -
  DKE43_RS00455 (DKE43_00460) - 91019..91168 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  DKE43_RS00460 (DKE43_00465) - 91285..91557 (+) 273 WP_034665009.1 YfhJ family protein -
  DKE43_RS00465 (DKE43_00470) - 91848..92831 (+) 984 WP_034665005.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30575.00 Da        Isoelectric Point: 6.6674

>NTDB_id=292635 DKE43_RS00440 WP_060595806.1 89578..90369(+) (recX) [Bacillus pumilus strain ZB201701]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVNQVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFAIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=292635 DKE43_RS00440 WP_060595806.1 89578..90369(+) (recX) [Bacillus pumilus strain ZB201701]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGACTTAAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTG
ACCGATTATTTGACGAAAAAAGAAATTCCAGCGCCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGTTAAAGCTTAAAGGGATAGACGATGACACCATTGAACAAGCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCCGTCAATCAGGTTCTCAAGCTTGTGAGAAAAGAAAAGAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTTCAGCGAAAGGGATTTTCGTTTGCGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAGTTTTTATTCAGAAAAGGCTTTGATCTCGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.118

100

0.631

Multiple sequence alignment