Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DI487_RS07610 Genome accession   NZ_CP029463
Coordinates   1638108..1639472 (-) Length   454 a.a.
NCBI ID   WP_109569109.1    Uniprot ID   -
Organism   Flavobacterium sediminis strain MEBiC07310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633108..1644472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI487_RS07580 (DI487_07580) - 1633245..1633742 (-) 498 WP_109569105.1 DUF6265 family protein -
  DI487_RS07585 (DI487_07585) - 1633758..1635284 (-) 1527 WP_109569106.1 bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein -
  DI487_RS07590 (DI487_07590) - 1635469..1635789 (+) 321 WP_109569107.1 single-stranded DNA-binding protein -
  DI487_RS07595 (DI487_07595) - 1635806..1636129 (+) 324 WP_109570632.1 single-stranded DNA-binding protein -
  DI487_RS07600 (DI487_07600) - 1636156..1636659 (-) 504 WP_109569108.1 nuclear transport factor 2 family protein -
  DI487_RS07605 (DI487_07605) - 1636663..1637996 (-) 1334 Protein_1518 ammonium transporter -
  DI487_RS07610 (DI487_07610) radA 1638108..1639472 (-) 1365 WP_109569109.1 DNA repair protein RadA Machinery gene
  DI487_RS07615 (DI487_07615) - 1639475..1640701 (-) 1227 WP_109569110.1 alpha/beta hydrolase -
  DI487_RS07620 (DI487_07620) - 1640737..1641702 (-) 966 WP_245896557.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  DI487_RS07625 (DI487_07625) panD 1641706..1642056 (-) 351 WP_109569112.1 aspartate 1-decarboxylase -
  DI487_RS07630 (DI487_07630) panC 1642134..1642981 (-) 848 Protein_1523 pantoate--beta-alanine ligase -
  DI487_RS07635 (DI487_07635) - 1643089..1643895 (+) 807 WP_109569113.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50254.82 Da        Isoelectric Point: 6.1074

>NTDB_id=292630 DI487_RS07610 WP_109569109.1 1638108..1639472(-) (radA) [Flavobacterium sediminis strain MEBiC07310]
MSKIKTAFFCQKCGTSYSKWQGQCYTCKEWNTIVEEVIQKEDKSTWRTASSQEKTKSSKPLLIKEIDTTEEIRLNTNDKE
LNRVLGSGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERILPSSENCYILTETKTQNIFRQ
IQEIEPEIVIIDSIQTLQTDYIESSAGSISQIRECTAELIKFAKETNTPVILIGHITKDGTIAGPKILEHMVDTVLQFEG
DRNHVYRILRSLKNRFGSTAELGIYEMLGNGLREVENPSEILISHKEEALSGTAIACTLEGMRPLMIEIQALVSSAVYGT
PQRSATGYNAKRLNMILAVLEKRAGFRLGTKDVFLNVTGGISVDDTAIDLAVVAAILSSNEDIAIEEGFCFAGEVGLSGE
IRPVNRIDQRIQEAEKLGFTTILVSKHNKISLKSSKIKIVLVSKIEDVVSELFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=292630 DI487_RS07610 WP_109569109.1 1638108..1639472(-) (radA) [Flavobacterium sediminis strain MEBiC07310]
ATGAGTAAAATAAAAACTGCTTTTTTTTGCCAGAAATGCGGCACGTCCTATTCTAAATGGCAAGGCCAATGTTATACTTG
CAAAGAGTGGAACACTATAGTTGAAGAAGTAATCCAAAAAGAAGATAAATCCACTTGGCGAACAGCTTCCTCACAAGAAA
AAACAAAAAGCAGCAAACCACTTCTCATAAAAGAAATAGACACCACTGAGGAAATCCGGTTAAACACTAATGACAAAGAG
TTAAACCGGGTTTTAGGCAGTGGCTTAGTTCCCGGTTCCTTAACTTTATTAGGGGGCGAACCCGGAATCGGAAAGAGTAC
TCTTTTATTGCAGATCTCACTAAAACTTCCTTACAGAACTCTTTATGTCTCCGGAGAAGAAAGTCAGAAACAAATTAAAA
TGCGTGCTGAACGTATTTTACCATCTAGCGAGAATTGCTATATTTTAACAGAGACCAAAACACAAAATATTTTCAGACAA
ATTCAGGAAATAGAACCGGAAATTGTCATTATTGATTCCATTCAGACTTTACAAACCGATTACATTGAATCATCAGCCGG
AAGCATTTCTCAGATCAGAGAATGTACTGCTGAATTAATAAAATTTGCCAAAGAAACTAATACACCGGTTATCCTAATCG
GACATATTACTAAAGACGGAACTATTGCCGGTCCTAAAATTTTAGAGCACATGGTTGATACCGTTTTACAATTTGAAGGC
GATCGAAACCATGTTTACCGGATTTTACGTTCCCTAAAAAACCGTTTCGGTTCTACTGCTGAATTAGGTATTTACGAAAT
GTTAGGCAACGGTTTACGGGAAGTTGAAAACCCCTCTGAAATTTTAATTTCTCACAAAGAAGAAGCTCTTTCGGGTACGG
CAATTGCCTGCACTTTAGAAGGTATGCGCCCGTTAATGATTGAAATTCAGGCTTTGGTAAGTTCTGCTGTCTACGGAACA
CCTCAACGCAGTGCAACCGGATATAATGCCAAACGCCTGAATATGATTTTAGCTGTTTTGGAAAAACGCGCCGGTTTCCG
GTTAGGAACGAAAGATGTTTTCTTAAATGTAACCGGTGGGATTTCTGTTGACGACACCGCTATCGACCTGGCTGTTGTAG
CGGCTATTTTATCCTCCAATGAAGATATTGCTATAGAGGAAGGATTCTGTTTTGCAGGAGAAGTTGGACTCTCCGGAGAA
ATTCGTCCTGTGAATAGAATTGACCAACGAATTCAGGAAGCTGAAAAATTAGGTTTCACGACGATTTTAGTCTCTAAACA
CAATAAAATTTCACTAAAAAGCAGTAAAATAAAAATTGTATTGGTTTCCAAAATAGAAGATGTCGTAAGCGAATTATTTG
GATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(334-428)

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.246

100

0.485
  radA Streptococcus mitis NCTC 12261

48.246

100

0.485
  radA Streptococcus pneumoniae Rx1

48.246

100

0.485
  radA Streptococcus pneumoniae R6

48.246

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.485
  radA Streptococcus mitis SK321

48.026

100

0.482
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

94.934

0.478

Multiple sequence alignment