Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DJ572_RS17760 Genome accession   NZ_CP029461
Coordinates   3417345..3418034 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain QB61     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3412345..3423034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS17725 (DJ572_17625) flgN 3412525..3413007 (-) 483 WP_003227999.1 flagellar protein FlgN -
  DJ572_RS17730 (DJ572_17630) flgM 3413023..3413289 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  DJ572_RS17735 (DJ572_17635) yvyF 3413370..3413789 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  DJ572_RS17740 (DJ572_17640) comFC 3413863..3414585 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  DJ572_RS17745 (DJ572_17645) comFB 3414549..3414845 (-) 297 WP_015483764.1 late competence protein ComFB -
  DJ572_RS17750 (DJ572_17650) comFA 3414905..3416296 (-) 1392 WP_088327075.1 ATP-dependent helicase ComFA Machinery gene
  DJ572_RS17755 (DJ572_17655) fakBA 3416402..3417247 (-) 846 WP_076457520.1 DegV family protein -
  DJ572_RS17760 (DJ572_17660) degU 3417345..3418034 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DJ572_RS17765 (DJ572_17665) degS 3418117..3419274 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  DJ572_RS17770 (DJ572_17670) yvyE 3419491..3420144 (+) 654 WP_003227979.1 YigZ family protein -
  DJ572_RS17775 (DJ572_17675) tagV 3420144..3421319 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  DJ572_RS17780 (DJ572_17680) tagO 3421392..3422468 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=292602 DJ572_RS17760 WP_003219701.1 3417345..3418034(-) (degU) [Bacillus subtilis strain QB61]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=292602 DJ572_RS17760 WP_003219701.1 3417345..3418034(-) (degU) [Bacillus subtilis strain QB61]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment