Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BPUM_RS04065 Genome accession   NC_009848
Coordinates   875561..876352 (+) Length   263 a.a.
NCBI ID   WP_012009320.1    Uniprot ID   A8FB62
Organism   Bacillus pumilus SAFR-032     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 870561..881352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS04040 (BPUM_0789) - 871325..871792 (+) 468 WP_012009314.1 thiol-disulfide oxidoreductase DCC family protein -
  BPUM_RS04045 (BPUM_0790) - 871829..873085 (-) 1257 WP_012009315.1 transcriptional regulator -
  BPUM_RS04050 (BPUM_0791) - 873357..873944 (+) 588 WP_012009316.1 nitroreductase family protein -
  BPUM_RS04055 (BPUM_0792) - 874190..874345 (-) 156 WP_012009317.1 YfhD family protein -
  BPUM_RS18620 - 874407..874517 (-) 111 WP_017358836.1 YfhE family protein -
  BPUM_RS04060 (BPUM_0794) - 874570..875466 (-) 897 WP_012009319.1 TIGR01777 family oxidoreductase -
  BPUM_RS04065 (BPUM_0795) recX 875561..876352 (+) 792 WP_012009320.1 recombination regulator RecX Regulator
  BPUM_RS04070 (BPUM_0796) - 876356..876670 (+) 315 WP_012009321.1 YfhH family protein -
  BPUM_RS18625 (BPUM_0797) - 876693..876866 (-) 174 WP_012009322.1 YpzG family protein -
  BPUM_RS04075 (BPUM_0798) - 876892..877041 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  BPUM_RS04080 (BPUM_0799) - 877158..877430 (+) 273 WP_012009323.1 YfhJ family protein -
  BPUM_RS04085 (BPUM_0800) - 877721..878704 (+) 984 WP_012009324.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30746.17 Da        Isoelectric Point: 6.7755

>NTDB_id=29258 BPUM_RS04065 WP_012009320.1 875561..876352(+) (recX) [Bacillus pumilus SAFR-032]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIEDDHIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSTKEIEQRIKLQLQRKGFSFEIIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=29258 BPUM_RS04065 WP_012009320.1 875561..876352(+) (recX) [Bacillus pumilus SAFR-032]
ATGCCCTATATTACAAAAATCTCTGCTCAAAAAAACAATACAGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTGGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGAAAAGAACTGGACGAAGCCGATATCATTGACATTC
AATTCGGTGATGCTGTCAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCAGTGAAAGAAGTC
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCCATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTCGAATTTGCAGAAGCTTATGTCAGTACTCACCGTAAAACGAACAGCAAAGGGCCATCCGTTCTGAAAAAAG
AGCTAAAGCTCAAAGGAATAGAGGATGACCACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCACAAAAGAAATCGAGCAGCGCATCAAACTGCA
GCTGCAGCGAAAGGGATTTTCGTTTGAGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGCAAGGTAGGATACGACGGATCATTTGAAAAGAAGATGAAG
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FB62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.738

100

0.627

Multiple sequence alignment