Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DJ572_RS11960 Genome accession   NZ_CP029461
Coordinates   2319876..2320679 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2314876..2325679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS11935 (DJ572_11900) glpQB 2316014..2316745 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  DJ572_RS11940 (DJ572_11905) yqiI 2316824..2317444 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  DJ572_RS11945 (DJ572_11910) - 2317464..2317760 (-) 297 WP_014480225.1 hypothetical protein -
  DJ572_RS11950 - 2318068..2318220 (+) 153 WP_014480226.1 hypothetical protein -
  DJ572_RS11955 (DJ572_11915) yqiG 2318293..2319411 (+) 1119 WP_029726733.1 NADH-dependent flavin oxidoreductase -
  DJ572_RS11960 (DJ572_11920) spo0A 2319876..2320679 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  DJ572_RS11965 (DJ572_11925) spoIVB 2320955..2322235 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  DJ572_RS11970 (DJ572_11930) recN 2322409..2324139 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  DJ572_RS11975 (DJ572_11935) argR 2324176..2324625 (-) 450 WP_003230265.1 arginine repressor ArgR -
  DJ572_RS11980 (DJ572_11940) yqxC 2324723..2325568 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=292569 DJ572_RS11960 WP_003226427.1 2319876..2320679(-) (spo0A) [Bacillus subtilis strain QB61]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=292569 DJ572_RS11960 WP_003226427.1 2319876..2320679(-) (spo0A) [Bacillus subtilis strain QB61]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment