Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DJ572_RS10970 Genome accession   NZ_CP029461
Coordinates   2142835..2143455 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2137835..2148455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS10930 (DJ572_10895) ptsA 2138963..2139469 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  DJ572_RS10935 (DJ572_10900) ypqA 2139607..2140026 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  DJ572_RS10940 (DJ572_10905) sppG 2140047..2140424 (-) 378 WP_015251832.1 YppG family protein -
  DJ572_RS10945 (DJ572_10910) yppF 2140612..2140800 (+) 189 WP_003230690.1 YppF family protein -
  DJ572_RS10950 (DJ572_10915) yppE 2140842..2141213 (-) 372 WP_029726786.1 YppE family protein -
  DJ572_RS10955 (DJ572_10920) yppD 2141259..2141504 (-) 246 WP_015251831.1 YppD family protein -
  DJ572_RS10960 (DJ572_10925) sspM 2141703..2141807 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  DJ572_RS10965 (DJ572_10930) yppC 2141832..2142794 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  DJ572_RS10970 (DJ572_10935) recU 2142835..2143455 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  DJ572_RS10975 (DJ572_10940) ponA 2143477..2146221 (+) 2745 WP_088326351.1 PBP1A family penicillin-binding protein -
  DJ572_RS10980 (DJ572_10945) ypoC 2146297..2146791 (-) 495 WP_029726783.1 YpoC family protein -
  DJ572_RS10985 (DJ572_10950) nth 2146788..2147447 (-) 660 WP_009967580.1 endonuclease III -
  DJ572_RS10990 (DJ572_10955) dnaD 2147466..2148164 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=292568 DJ572_RS10970 WP_004399067.1 2142835..2143455(+) (recU) [Bacillus subtilis strain QB61]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=292568 DJ572_RS10970 WP_004399067.1 2142835..2143455(+) (recU) [Bacillus subtilis strain QB61]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment