Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   EQH88_RS11915 Genome accession   NZ_CP035161
Coordinates   2307019..2308509 (-) Length   496 a.a.
NCBI ID   WP_069703891.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302019..2313509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS11885 (EQH88_11885) gudB 2302157..2303431 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  EQH88_RS11890 (EQH88_11890) mecB 2303587..2304171 (-) 585 WP_003230533.1 genetic competence negative regulator -
  EQH88_RS11895 (EQH88_11895) ypbG 2304330..2305109 (-) 780 WP_003230532.1 metallophosphoesterase -
  EQH88_RS11900 (EQH88_11900) ypbF 2305196..2305639 (-) 444 WP_003230531.1 YpbF family protein -
  EQH88_RS11905 (EQH88_11905) claE 2305702..2306439 (-) 738 WP_069703892.1 LysM peptidoglycan-binding domain-containing protein -
  EQH88_RS11910 (EQH88_11910) ypbD 2306390..2306992 (-) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  EQH88_RS11915 (EQH88_11915) recS 2307019..2308509 (-) 1491 WP_069703891.1 ATP-dependent DNA helicase RecQ Machinery gene
  EQH88_RS11920 (EQH88_11920) gmmB 2308502..2309560 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  EQH88_RS11925 (EQH88_11925) fdxA 2309826..2310074 (+) 249 WP_003225461.1 ferredoxin -
  EQH88_RS11930 (EQH88_11930) fmnP 2310113..2310685 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  EQH88_RS11935 (EQH88_11935) serA 2311182..2312759 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56580.13 Da        Isoelectric Point: 6.4518

>NTDB_id=292567 EQH88_RS11915 WP_069703891.1 2307019..2308509(-) (recS) [Bacillus subtilis strain SRCM103862]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHQYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPRDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=292567 EQH88_RS11915 WP_069703891.1 2307019..2308509(-) (recS) [Bacillus subtilis strain SRCM103862]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAGGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCAATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACTCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCATCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGTGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAAGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment