Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECIAI39_RS21260 Genome accession   NC_011750
Coordinates   4411920..4412396 (+) Length   158 a.a.
NCBI ID   WP_001186792.1    Uniprot ID   -
Organism   Escherichia coli IAI39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4406920..4417396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI39_RS21230 (ECIAI39_4236) - 4407417..4408301 (+) 885 WP_001116796.1 YfjP family GTPase -
  ECIAI39_RS21235 - 4408504..4409184 (+) 681 WP_001278651.1 WYL domain-containing protein -
  ECIAI39_RS21240 (ECIAI39_4237) - 4409335..4410012 (+) 678 WP_001097562.1 hypothetical protein -
  ECIAI39_RS21245 (ECIAI39_4238) - 4410018..4410251 (+) 234 WP_000883181.1 DUF905 family protein -
  ECIAI39_RS21250 (ECIAI39_4239) - 4410341..4411159 (+) 819 WP_001175143.1 DUF932 domain-containing protein -
  ECIAI39_RS21255 (ECIAI39_4240) - 4411425..4411904 (+) 480 WP_000706978.1 antirestriction protein -
  ECIAI39_RS21260 (ECIAI39_4241) radC 4411920..4412396 (+) 477 WP_001186792.1 RadC family protein Machinery gene
  ECIAI39_RS21265 (ECIAI39_4242) - 4412483..4412704 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  ECIAI39_RS21270 (ECIAI39_4243) - 4412784..4413152 (+) 369 WP_001285614.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECIAI39_RS21275 (ECIAI39_4244) - 4413241..4413618 (+) 378 WP_000854823.1 TA system toxin CbtA family protein -
  ECIAI39_RS21280 - 4413615..4413764 (+) 150 Protein_4204 DUF5983 family protein -
  ECIAI39_RS21285 - 4413840..4414037 (+) 198 WP_087890155.1 DUF957 domain-containing protein -
  ECIAI39_RS21290 (ECIAI39_4246) - 4414122..4414964 (+) 843 WP_001290170.1 DUF4942 domain-containing protein -
  ECIAI39_RS21295 (ECIAI39_4247) rhuM 4415201..4415329 (+) 129 Protein_4207 RhuM family protein -
  ECIAI39_RS21300 (ECIAI39_4248) setC 4415758..4416942 (+) 1185 WP_001172866.1 sugar efflux transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17672.38 Da        Isoelectric Point: 8.7161

>NTDB_id=29256 ECIAI39_RS21260 WP_001186792.1 4411920..4412396(+) (radC) [Escherichia coli IAI39]
MQQLSFLPVAMTPGERSLIQRALKTLNRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29256 ECIAI39_RS21260 WP_001186792.1 4411920..4412396(+) (radC) [Escherichia coli IAI39]
ATGCAACAGCTTTCCTTTCTGCCCGTAGCGATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGAA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment