Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   DJ572_RS05780 Genome accession   NZ_CP029461
Coordinates   1115800..1116951 (+) Length   383 a.a.
NCBI ID   WP_119899245.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1110800..1121951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS05745 (DJ572_05755) yjbB 1111472..1112689 (+) 1218 WP_010886478.1 MFS transporter -
  DJ572_RS05750 (DJ572_05760) yjbC 1112853..1113431 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  DJ572_RS05755 (DJ572_05765) spx 1113612..1114007 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  DJ572_RS05760 (DJ572_05770) yjbE 1114050..1114706 (-) 657 WP_003232944.1 TerC family protein -
  DJ572_RS05765 - 1114876..1115016 (+) 141 WP_119122854.1 hypothetical protein -
  DJ572_RS05770 (DJ572_05775) mecA 1114983..1115639 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  DJ572_RS05775 - 1115634..1115756 (-) 123 WP_021479547.1 hypothetical protein -
  DJ572_RS05780 (DJ572_05780) coiA 1115800..1116951 (+) 1152 WP_119899245.1 competence protein CoiA Machinery gene
  DJ572_RS05785 (DJ572_05785) pepF 1117181..1119010 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  DJ572_RS05790 (DJ572_05790) - 1119048..1119215 (-) 168 WP_003244944.1 hypothetical protein -
  DJ572_RS05800 (DJ572_05800) spxH 1119529..1120428 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  DJ572_RS05805 (DJ572_05805) bhbI 1120425..1120823 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  DJ572_RS05810 (DJ572_05810) cwlQ 1121078..1121812 (-) 735 WP_029726274.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44831.95 Da        Isoelectric Point: 9.9342

>NTDB_id=292557 DJ572_RS05780 WP_119899245.1 1115800..1116951(+) (coiA) [Bacillus subtilis strain QB61]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIKTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=292557 DJ572_RS05780 WP_119899245.1 1115800..1116951(+) (coiA) [Bacillus subtilis strain QB61]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGATATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAAGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGACTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAATTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGTGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.66

97.389

0.961


Multiple sequence alignment