Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DJ572_RS05205 Genome accession   NZ_CP029461
Coordinates   1003024..1003602 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 998024..1008602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS05185 (DJ572_05195) hemAT 998535..999833 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  DJ572_RS05190 (DJ572_05200) comW 999972..1001501 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  DJ572_RS05195 (DJ572_05205) yhxC 1001613..1002470 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  DJ572_RS05200 (DJ572_05210) yhzC 1002498..1002731 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  DJ572_RS05205 (DJ572_05215) comK 1003024..1003602 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  DJ572_RS05210 (DJ572_05220) yhxD 1003649..1004548 (-) 900 WP_101172512.1 SDR family oxidoreductase -
  DJ572_RS05215 (DJ572_05225) yhjA 1004765..1005034 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  DJ572_RS05220 (DJ572_05230) yhjB 1005078..1006547 (-) 1470 WP_003233134.1 sodium:solute symporter -
  DJ572_RS05225 (DJ572_05235) yhjC 1006544..1006744 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  DJ572_RS05230 (DJ572_05240) - 1006943..1007314 (-) 372 WP_014476361.1 hypothetical protein -
  DJ572_RS05235 (DJ572_05245) yhjE 1007466..1008089 (+) 624 WP_010886465.1 VTT domain-containing protein -
  DJ572_RS05240 (DJ572_05250) lepB 1008091..1008597 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=292549 DJ572_RS05205 WP_029317573.1 1003024..1003602(+) (comK) [Bacillus subtilis strain QB61]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=292549 DJ572_RS05205 WP_029317573.1 1003024..1003602(+) (comK) [Bacillus subtilis strain QB61]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment