Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BPUM_RS00255 Genome accession   NC_009848
Coordinates   47160..47450 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus SAFR-032     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42160..52450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS00215 (BPUM_0013) - 42195..42524 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  BPUM_RS00220 (BPUM_0014) - 42537..42977 (+) 441 WP_012008641.1 YaaR family protein -
  BPUM_RS00225 (BPUM_0015) holB 42989..43978 (+) 990 WP_012008642.1 DNA polymerase III subunit delta' -
  BPUM_RS00230 (BPUM_0016) - 43981..44808 (+) 828 WP_012008643.1 PSP1 domain-containing protein -
  BPUM_RS00235 (BPUM_0017) yabA 44823..45176 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  BPUM_RS00240 (BPUM_0018) - 45232..45975 (+) 744 WP_012008644.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BPUM_RS00245 (BPUM_0019) - 45962..46258 (+) 297 WP_012008645.1 GIY-YIG nuclease family protein -
  BPUM_RS00250 (BPUM_0020) rsmI 46236..47114 (+) 879 WP_012008646.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BPUM_RS00255 (BPUM_0021) abrB 47160..47450 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BPUM_RS00260 (BPUM_0022) metG 47971..49971 (+) 2001 WP_012008647.1 methionine--tRNA ligase -
  BPUM_RS00265 (BPUM_0023) - 50054..50821 (+) 768 WP_012008648.1 TatD family hydrolase -
  BPUM_RS00270 (BPUM_0024) - 51066..52268 (+) 1203 WP_012008649.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=29253 BPUM_RS00255 WP_087975202.1 47160..47450(-) (abrB) [Bacillus pumilus SAFR-032]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=29253 BPUM_RS00255 WP_087975202.1 47160..47450(-) (abrB) [Bacillus pumilus SAFR-032]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment