Detailed information NTG0292425

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EQK40_RS05300
• Genome accession: NZ_CP035123
• Coordinates: 1076582..1077574 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1071582..1082574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQK40_RS05270 (EQK40_05275)	ispD	1071643..1072353 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EQK40_RS05275 (EQK40_05280)	ispF	1072353..1072832 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EQK40_RS05280 (EQK40_05285)	truD	1072829..1073878 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EQK40_RS05285 (EQK40_05290)	surE	1073859..1074620 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
EQK40_RS05290 (EQK40_05295)	pcm	1074614..1075240 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EQK40_RS05295 (EQK40_05300)	nlpD	1075425..1076519 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EQK40_RS05300 (EQK40_05305)	rpoS	1076582..1077574 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EQK40_RS05305 (EQK40_05310)	ygbN	1077668..1079032 (-)	1365	WP_000104456.1	GntP family transporter	-
EQK40_RS05310 (EQK40_05315)	ygbM	1079121..1079897 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
EQK40_RS05315 (EQK40_05320)	ygbL	1079902..1080540 (-)	639	WP_001278994.1	aldolase	-
EQK40_RS05320 (EQK40_05325)	otnK	1080537..1081799 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=292425 EQK40_RS05300 WP_000081550.1 1076582..1077574(+) (rpoS) [Escherichia coli strain EC25]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=292425 EQK40_RS05300 WP_000081550.1 1076582..1077574(+) (rpoS) [Escherichia coli strain EC25]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715