Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EM806_RS06550 Genome accession   NZ_CP035106
Coordinates   1320167..1320634 (+) Length   155 a.a.
NCBI ID   WP_000856655.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315167..1325634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM806_RS06530 dnaK 1315363..1317225 (+) 1863 WP_128480235.1 molecular chaperone DnaK -
  EM806_RS07745 - 1317372..1317941 (-) 570 WP_128480381.1 hypothetical protein -
  EM806_RS06540 - 1318057..1318974 (+) 918 WP_164878890.1 O-acetylserine-dependent cystathionine beta-synthase -
  EM806_RS06545 - 1318995..1320137 (+) 1143 WP_128480237.1 cystathionine gamma-synthase -
  EM806_RS06550 luxS 1320167..1320634 (+) 468 WP_000856655.1 S-ribosylhomocysteine lyase Regulator
  EM806_RS06555 - 1320810..1322510 (+) 1701 WP_341845720.1 5'-nucleotidase C-terminal domain-containing protein -
  EM806_RS06560 tlpB 1322717..1324418 (+) 1702 Protein_1248 methyl-accepting chemotaxis protein TlpB -
  EM806_RS06565 - 1324449..1325231 (+) 783 WP_128480239.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17634.18 Da        Isoelectric Point: 7.1165

>NTDB_id=292399 EM806_RS06550 WP_000856655.1 1320167..1320634(+) (luxS) [Helicobacter pylori strain Hpbs3]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=292399 EM806_RS06550 WP_000856655.1 1320167..1320634(+) (luxS) [Helicobacter pylori strain Hpbs3]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCCAAGAATTTAGCGCGTGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374