Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DKC09_RS08200 Genome accession   NZ_CP029437
Coordinates   816087..816683 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain CAV2013     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 811087..821683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKC09_RS08185 (DKC09_08185) helD 811298..813352 (-) 2055 WP_109546484.1 DNA helicase IV -
  DKC09_RS08190 (DKC09_08190) - 813477..813923 (+) 447 WP_004201437.1 YccF domain-containing protein -
  DKC09_RS08195 (DKC09_08195) yccS 813941..816076 (+) 2136 WP_023289054.1 YccS family putative transporter -
  DKC09_RS08200 (DKC09_08200) sxy/tfoX 816087..816683 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  DKC09_RS31310 - 816701..817006 (-) 306 WP_156835198.1 hypothetical protein -
  DKC09_RS08210 (DKC09_08210) sulA 817032..817541 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  DKC09_RS08215 (DKC09_08215) ompA 817894..818964 (+) 1071 WP_023289051.1 porin OmpA -
  DKC09_RS08220 (DKC09_08220) matP 819111..819563 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DKC09_RS08225 (DKC09_08225) - 819749..821506 (+) 1758 WP_060592378.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=292388 DKC09_RS08200 WP_023289053.1 816087..816683(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain CAV2013]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=292388 DKC09_RS08200 WP_023289053.1 816087..816683(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain CAV2013]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCACTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495

Multiple sequence alignment