Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EM806_RS01540 Genome accession   NZ_CP035106
Coordinates   295972..297021 (-) Length   349 a.a.
NCBI ID   WP_128479433.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290972..302021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM806_RS01520 rpsL 291785..292192 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  EM806_RS01525 rpsG 292208..292675 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  EM806_RS01530 fusA 292687..294765 (+) 2079 WP_000101843.1 elongation factor G -
  EM806_RS01535 - 295513..295785 (+) 273 WP_000744165.1 hypothetical protein -
  EM806_RS01540 waaF 295972..297021 (-) 1050 WP_128479433.1 lipopolysaccharide heptosyltransferase II Regulator
  EM806_RS01545 hisS 297083..298411 (+) 1329 WP_128479435.1 histidine--tRNA ligase -
  EM806_RS01550 asd 298398..299438 (+) 1041 WP_128479437.1 aspartate-semialdehyde dehydrogenase -
  EM806_RS01555 - 299849..301003 (+) 1155 WP_128479438.1 DUF874 family protein -
  EM806_RS01560 - 301240..301983 (-) 744 WP_014536785.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39513.34 Da        Isoelectric Point: 9.8454

>NTDB_id=292374 EM806_RS01540 WP_128479433.1 295972..297021(-) (waaF) [Helicobacter pylori strain Hpbs3]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKDYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASHYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKVAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=292374 EM806_RS01540 WP_128479433.1 295972..297021(-) (waaF) [Helicobacter pylori strain Hpbs3]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGACATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCAAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTCATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATCCAAT
AACGCTTATAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCCATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCCCAAAAAACAATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAAAAGTCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361