Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EM803_RS01575 Genome accession   NZ_CP035105
Coordinates   296050..297099 (-) Length   349 a.a.
NCBI ID   WP_128481040.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 291050..302099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM803_RS01555 rpsL 291856..292263 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  EM803_RS01560 rpsG 292279..292746 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  EM803_RS01565 fusA 292758..294836 (+) 2079 WP_128481039.1 elongation factor G -
  EM803_RS01570 - 295590..295862 (+) 273 WP_000744165.1 hypothetical protein -
  EM803_RS01575 waaF 296050..297099 (-) 1050 WP_128481040.1 lipopolysaccharide heptosyltransferase II Regulator
  EM803_RS01580 hisS 297161..298489 (+) 1329 WP_000632524.1 histidine--tRNA ligase -
  EM803_RS01585 asd 298476..299516 (+) 1041 WP_128481041.1 aspartate-semialdehyde dehydrogenase -
  EM803_RS01590 - 299930..301075 (+) 1146 WP_128481042.1 DUF874 family protein -
  EM803_RS01595 - 301337..302080 (-) 744 Protein_299 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39623.60 Da        Isoelectric Point: 9.8381

>NTDB_id=292335 EM803_RS01575 WP_128481040.1 296050..297099(-) (waaF) [Helicobacter pylori strain Hpbs2]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASHYAEVSAALLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSIMPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=292335 EM803_RS01575 WP_128481040.1 296050..297099(-) (waaF) [Helicobacter pylori strain Hpbs2]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTCATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCCTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCATGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361