Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DF184_RS08755 Genome accession   NZ_CP029398
Coordinates   1764704..1765438 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain HN105     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759704..1770438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS08725 (DF184_08725) - 1759932..1760228 (-) 297 WP_024389460.1 YlxR family protein -
  DF184_RS08730 (DF184_08730) nusA 1760245..1761387 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  DF184_RS08735 (DF184_08735) rimP 1761460..1761930 (-) 471 WP_079396220.1 ribosome maturation factor RimP -
  DF184_RS08740 (DF184_08740) trmB 1762188..1762826 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DF184_RS08745 (DF184_08745) - 1762823..1763617 (-) 795 WP_002942360.1 phosphotransferase family protein -
  DF184_RS08750 (DF184_08750) - 1763667..1764707 (-) 1041 WP_024401265.1 ABC transporter permease -
  DF184_RS08755 (DF184_08755) pptA 1764704..1765438 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  DF184_RS08760 (DF184_08760) - 1765501..1765914 (+) 414 WP_024401266.1 HIT family protein -
  DF184_RS08765 (DF184_08765) - 1765916..1766218 (+) 303 WP_015647347.1 hypothetical protein -
  DF184_RS08770 (DF184_08770) - 1766328..1767521 (-) 1194 WP_024401267.1 LCP family protein -
  DF184_RS08775 (DF184_08775) - 1767518..1768045 (-) 528 WP_024376436.1 GNAT family N-acetyltransferase -
  DF184_RS08780 (DF184_08780) tsaE 1768038..1768478 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DF184_RS08785 (DF184_08785) - 1768580..1770244 (-) 1665 WP_044673929.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=292291 DF184_RS08755 WP_002942356.1 1764704..1765438(-) (pptA) [Streptococcus suis strain HN105]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=292291 DF184_RS08755 WP_002942356.1 1764704..1765438(-) (pptA) [Streptococcus suis strain HN105]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGGCAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCC
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment