Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | C8J_RS05650 | Genome accession | NC_009839 |
| Coordinates | 1098934..1099884 (+) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni subsp. jejuni 81116 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1077576..1114804 | 1098934..1099884 | within | 0 |
Gene organization within MGE regions
Location: 1077576..1114804
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C8J_RS05535 (C8J_1068) | pglI | 1077576..1078505 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| C8J_RS05540 (C8J_1069) | pglH | 1078498..1079577 (-) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| C8J_RS05545 (C8J_1070) | pglK | 1079574..1081268 (-) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| C8J_RS05550 (C8J_1071) | galE | 1081262..1082248 (-) | 987 | WP_002877060.1 | UDP-glucose 4-epimerase GalE | - |
| C8J_RS05555 (C8J_1072) | - | 1082307..1083101 (-) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| C8J_RS05560 (C8J_1073) | waaC | 1083167..1084195 (+) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| C8J_RS05565 (C8J_1074) | htrB | 1084185..1085063 (+) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| C8J_RS05570 (C8J_1075) | - | 1085060..1085761 (+) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| C8J_RS05575 (C8J_1076) | rfbA | 1085772..1086650 (+) | 879 | WP_002866148.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| C8J_RS05580 (C8J_1077) | rfbB | 1086650..1087681 (+) | 1032 | WP_002866149.1 | dTDP-glucose 4,6-dehydratase | - |
| C8J_RS05585 (C8J_1078) | wlaRA | 1087684..1088109 (+) | 426 | WP_012006732.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| C8J_RS05590 (C8J_1079) | wlaRB | 1088131..1088538 (+) | 408 | WP_002866152.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| C8J_RS05595 (C8J_1080) | - | 1088528..1088998 (+) | 471 | WP_002932643.1 | acyltransferase | - |
| C8J_RS05600 (C8J_1081) | wlaRD | 1088991..1089809 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| C8J_RS05605 (C8J_1082) | - | 1089828..1090892 (+) | 1065 | WP_002866155.1 | glycosyltransferase family 2 protein | - |
| C8J_RS05610 (C8J_1083) | - | 1090904..1091956 (+) | 1053 | WP_041176357.1 | glycosyltransferase family A protein | - |
| C8J_RS05615 (C8J_1084) | wlaRG | 1091922..1093007 (+) | 1086 | WP_032603539.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| C8J_RS05620 (C8J_1085) | - | 1093041..1094294 (-) | 1254 | WP_002866158.1 | DUF2972 domain-containing protein | - |
| C8J_RS05625 (C8J_1086) | - | 1094291..1095193 (-) | 903 | WP_002866159.1 | hypothetical protein | - |
| C8J_RS05630 (C8J_1088) | - | 1095376..1096149 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| C8J_RS05635 (C8J_1089) | wlaTB | 1096142..1097098 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| C8J_RS05640 (C8J_1090) | wlaTC | 1097095..1098054 (+) | 960 | WP_012006735.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| C8J_RS05645 (C8J_1091) | - | 1098057..1098875 (-) | 819 | WP_002866163.1 | glycosyltransferase family 2 protein | - |
| C8J_RS05650 (C8J_1092) | waaF | 1098934..1099884 (+) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| C8J_RS05655 (C8J_1093) | - | 1099936..1101435 (+) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| C8J_RS05660 (C8J_1094) | - | 1101583..1102560 (+) | 978 | WP_002866168.1 | hypothetical protein | - |
| C8J_RS05665 (C8J_1095) | gmhA | 1102564..1103124 (-) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| C8J_RS05670 (C8J_1096) | rfaE1 | 1103121..1104506 (-) | 1386 | WP_002877121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| C8J_RS05675 (C8J_1097) | rfaD | 1104499..1105452 (-) | 954 | WP_002877123.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| C8J_RS05680 (C8J_1098) | gmhB | 1105453..1106013 (-) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| C8J_RS05685 (C8J_1099) | - | 1106095..1106397 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| C8J_RS05690 (C8J_1100) | ccoS | 1106420..1106626 (-) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| C8J_RS05695 (C8J_1101) | - | 1106623..1108980 (-) | 2358 | WP_072238644.1 | heavy metal translocating P-type ATPase | - |
| C8J_RS05700 (C8J_1102) | rho | 1109090..1110388 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| C8J_RS05705 (C8J_1103) | dnaX | 1110392..1111921 (+) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
| C8J_RS05710 (C8J_1104) | - | 1111918..1112439 (-) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| C8J_RS05715 (C8J_1105) | copA | 1112511..1114610 (-) | 2100 | WP_002866176.1 | copper-translocating P-type ATPase CopA | - |
| C8J_RS05720 (C8J_1106) | - | 1114610..1114804 (-) | 195 | WP_002870481.1 | cation transporter | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=29229 C8J_RS05650 WP_002866164.1 1098934..1099884(+) (waaF) [Campylobacter jejuni subsp. jejuni 81116]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=29229 C8J_RS05650 WP_002866164.1 1098934..1099884(+) (waaF) [Campylobacter jejuni subsp. jejuni 81116]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |