Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   DF184_RS07990 Genome accession   NZ_CP029398
Coordinates   1607456..1609231 (-) Length   591 a.a.
NCBI ID   WP_044681130.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602456..1614231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS07960 (DF184_07960) - 1602540..1602962 (+) 423 WP_012027608.1 membrane protein -
  DF184_RS07965 (DF184_07965) - 1602952..1604751 (+) 1800 WP_044685714.1 acyltransferase family protein -
  DF184_RS07970 (DF184_07970) - 1604975..1605628 (-) 654 WP_109371783.1 phosphatase PAP2 family protein -
  DF184_RS07975 (DF184_07975) - 1605653..1606210 (-) 558 WP_009910581.1 ECF transporter S component -
  DF184_RS07980 (DF184_07980) - 1606534..1607079 (-) 546 WP_109371785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DF184_RS07990 (DF184_07990) oppA 1607456..1609231 (-) 1776 WP_044681130.1 oligopeptide ABC transporter substrate-binding protein Regulator
  DF184_RS07995 (DF184_07995) yidD 1609652..1609891 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  DF184_RS08000 (DF184_08000) - 1609891..1610622 (-) 732 WP_012027615.1 pseudouridine synthase -
  DF184_RS08005 (DF184_08005) scpB 1610612..1611181 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  DF184_RS08010 (DF184_08010) - 1611165..1611884 (-) 720 WP_002942755.1 segregation/condensation protein A -
  DF184_RS08015 (DF184_08015) xerD 1611884..1612615 (-) 732 WP_024400981.1 site-specific tyrosine recombinase XerD -
  DF184_RS08020 (DF184_08020) cbpB 1612612..1613070 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  DF184_RS08025 (DF184_08025) - 1613067..1613594 (-) 528 WP_074391734.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65383.14 Da        Isoelectric Point: 4.2949

>NTDB_id=292288 DF184_RS07990 WP_044681130.1 1607456..1609231(-) (oppA) [Streptococcus suis strain HN105]
MKRMKNIALTGIGLLSIAALTACQTKEKTSDVALTFNSEVTNEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQGFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDAAGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDKNTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=292288 DF184_RS07990 WP_044681130.1 1607456..1609231(-) (oppA) [Streptococcus suis strain HN105]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAGCGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATCGAAGGCGGGAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCACCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGTCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGGCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGACACTACCTATACAAATATCATT
GGTTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGCGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAGAAACTTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACGGTATGCGTGAAGATGCTGCTGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAACAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCGATTGCTGCCAATGATGAGGGGATTGACGTCTATCTT
GCTGCTTGGATTGCCGGTCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATAAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGCAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.32

100

0.657

Multiple sequence alignment