Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DJ533_RS05205 Genome accession   NZ_CP029397
Coordinates   587725..588606 (+) Length   293 a.a.
NCBI ID   WP_065995460.1    Uniprot ID   A0A2S2FAQ2
Organism   Acinetobacter defluvii strain WCHA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582725..593606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS05175 (DJ533_05185) wrbA 582928..583521 (+) 594 WP_065995454.1 NAD(P)H:quinone oxidoreductase -
  DJ533_RS05180 (DJ533_05190) - 583668..584051 (-) 384 WP_065995455.1 hypothetical protein -
  DJ533_RS05185 (DJ533_05195) - 584285..585160 (-) 876 WP_065995456.1 acyl-CoA thioesterase II -
  DJ533_RS05190 (DJ533_05200) - 585298..585873 (-) 576 WP_065995457.1 xanthine phosphoribosyltransferase -
  DJ533_RS05195 (DJ533_05205) - 585976..586680 (-) 705 WP_065995458.1 DUF3108 domain-containing protein -
  DJ533_RS05200 (DJ533_05210) - 586823..587506 (-) 684 WP_065995459.1 hypothetical protein -
  DJ533_RS05205 (DJ533_05215) tonB2 587725..588606 (+) 882 WP_065995460.1 energy transducer TonB Machinery gene
  DJ533_RS05210 (DJ533_05220) - 588791..589237 (+) 447 WP_081406160.1 hypothetical protein -
  DJ533_RS05215 (DJ533_05225) - 589307..590416 (-) 1110 WP_081406161.1 mechanosensitive ion channel family protein -
  DJ533_RS05220 (DJ533_05230) ybeY 590624..591109 (-) 486 WP_065995462.1 rRNA maturation RNase YbeY -
  DJ533_RS05225 (DJ533_05235) - 591137..592213 (-) 1077 WP_065995463.1 PhoH family protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33345.04 Da        Isoelectric Point: 9.1290

>NTDB_id=292221 DJ533_RS05205 WP_065995460.1 587725..588606(+) (tonB2) [Acinetobacter defluvii strain WCHA30]
MFKKMSTTSKAFLPWWEDNIFLGAVIVAIAVHLVFISLQFAEPTEQNTQSKEIAVTLRPSADEVKDADFLAQEDQHGSGI
FRQKHRMSSEMPAQAEDLSAGDQQLQALEKVQQKRELKFEEKVLMTVLSWQKQAEQNERKKAMDELQSQFQAKAAMVASL
EAQYLQKQQNFSKQQKIKTVDGIQAKKDASAGYLEKFRAKVELYGNRYYPEQAKLQRLSGEVRLMVILNASGGIRAIRLI
ESSGHPILDEAAKNSVRKGAPFGNFDANMKDISELRIIRTWRFDPAESEFEVR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=292221 DJ533_RS05205 WP_065995460.1 587725..588606(+) (tonB2) [Acinetobacter defluvii strain WCHA30]
ATGTTTAAAAAAATGAGTACTACATCTAAGGCTTTTTTACCTTGGTGGGAAGACAACATCTTTTTGGGTGCGGTGATTGT
CGCAATTGCCGTTCATTTGGTGTTTATTTCTTTGCAGTTTGCTGAACCGACAGAGCAAAATACTCAAAGTAAAGAGATTG
CGGTAACGCTTCGTCCTAGTGCGGATGAAGTAAAAGATGCAGACTTTTTGGCTCAGGAAGATCAACACGGCTCAGGGATT
TTTCGCCAAAAACATCGTATGTCGAGTGAAATGCCCGCACAGGCTGAAGATTTGAGTGCAGGGGATCAACAATTACAAGC
CTTAGAAAAAGTACAACAAAAGCGTGAATTAAAGTTTGAAGAAAAAGTGTTAATGACAGTTTTAAGTTGGCAAAAACAAG
CTGAACAAAATGAGCGTAAAAAAGCCATGGATGAATTGCAAAGCCAGTTCCAAGCCAAGGCAGCAATGGTTGCGAGTTTG
GAAGCACAGTATTTACAGAAGCAACAAAATTTTAGTAAGCAACAAAAAATTAAAACGGTAGATGGTATTCAAGCGAAAAA
AGATGCTTCAGCGGGATATTTGGAAAAGTTCCGCGCCAAAGTAGAGTTGTATGGTAATCGTTATTATCCAGAACAAGCCA
AACTTCAGCGTTTATCAGGTGAAGTGCGTTTGATGGTGATTTTGAACGCATCTGGCGGAATTCGTGCGATTCGTTTGATT
GAAAGTTCAGGGCATCCGATTTTAGATGAGGCTGCAAAGAACTCGGTACGTAAAGGTGCGCCTTTTGGAAATTTTGATGC
CAATATGAAAGATATTTCTGAATTACGAATTATTCGGACTTGGCGTTTTGATCCAGCAGAATCAGAGTTTGAGGTGCGTT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FAQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.014

100

0.72

Multiple sequence alignment