Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DJ533_RS04565 Genome accession   NZ_CP029397
Coordinates   474633..476870 (-) Length   745 a.a.
NCBI ID   WP_065994028.1    Uniprot ID   A0A2S2FA96
Organism   Acinetobacter defluvii strain WCHA30     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469633..481870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS04545 (DJ533_04555) - 469722..470051 (-) 330 WP_065994024.1 chaperone modulator CbpM -
  DJ533_RS04550 (DJ533_04560) - 470080..471042 (-) 963 WP_065994025.1 DnaJ C-terminal domain-containing protein -
  DJ533_RS04555 (DJ533_04565) - 471392..472267 (-) 876 WP_065994026.1 Hsp33 family molecular chaperone HslO -
  DJ533_RS04560 (DJ533_04570) - 472322..474223 (-) 1902 WP_065994027.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DJ533_RS04565 (DJ533_04575) priA 474633..476870 (-) 2238 WP_065994028.1 primosomal protein N' Machinery gene
  DJ533_RS04570 (DJ533_04580) gspF 477036..478241 (+) 1206 WP_065994029.1 type II secretion system inner membrane protein GspF -
  DJ533_RS04575 (DJ533_04585) gspG 478292..478729 (+) 438 WP_065994030.1 type II secretion system major pseudopilin GspG -
  DJ533_RS04580 (DJ533_04590) - 479001..479336 (+) 336 WP_065994031.1 hypothetical protein -
  DJ533_RS04585 (DJ533_04595) - 479439..479867 (-) 429 WP_065994032.1 GFA family protein -
  DJ533_RS04590 (DJ533_04600) - 479956..480294 (+) 339 WP_065994033.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84684.12 Da        Isoelectric Point: 8.8721

>NTDB_id=292218 DJ533_RS04565 WP_065994028.1 474633..476870(-) (priA) [Acinetobacter defluvii strain WCHA30]
MPNSENINVTPQNIIYRVRVAVPVFLYDCFDYKVSAEQYAQADVGMRVAVSFGRQKLVAIITEKLAIDTPIDPRFQLKSV
TEFLDDRAILNDKVLSLLTWAAHYYQFPIGEVMQTALPILLRQGKPYNLLARIWKVLDLNAEDKVKRSEKQQEAYKILKL
HPQGTQENILNLSGIETATLKALEKKEIIICDLEPQNFKPEPVSLAQMPLTANEDQKKAIQTILKAQKKYQAFLLDGLTG
SGKTEVYLQVMQEILKQGKQVLVLVPEIGLTPQTVSRFQSRFHCNIALLHSGLNDTKRLQAWQHSETGKASIILGTRSAI
FTPMPHLGLIILDEEHDLSFKQQDGFRYHARDVALYRAHLENCPIILGSATPSIDSYFLAQQGKLTRLELNQRAGTAIMP
KMHVIDLKISKKTAGLSEQLISEIGKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPHCDAHFTLHLKPYSHLHCHHC
GTINRLPDACPACNQNTLKPIGMGTAKVEEALNELFPKYPVVRVDRDSISRVGSWQKIYDQIQKSEPTILLGTQMLAKGH
HFPYVTLVAILDIDAGLLSVDFRATERTAQLIVQVAGRSGRGEKKGDVYLQTLRPDHPLLNILLDKNYRAFAKQTLADRK
IAEMPPYRYAVLLRCESKSQDENQTFLTEMTQQLRLNSEENLIDIWGPIPAPMERKAGRYQAHVVLLSHDRAKMHFYIRQ
WWQYVLQQKPSQMKLTIDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=292218 DJ533_RS04565 WP_065994028.1 474633..476870(-) (priA) [Acinetobacter defluvii strain WCHA30]
ATGCCAAATTCAGAAAATATCAACGTAACACCACAAAACATCATATATCGTGTACGGGTCGCAGTACCTGTATTTTTATA
TGATTGTTTTGACTATAAAGTCAGTGCTGAACAATATGCGCAGGCAGATGTCGGTATGCGTGTTGCAGTATCTTTTGGTC
GGCAAAAGCTGGTTGCAATTATTACTGAAAAGTTAGCAATAGATACCCCGATTGATCCTCGCTTTCAACTCAAATCAGTG
ACTGAGTTTTTAGACGATCGTGCGATTTTAAATGACAAAGTTTTAAGTTTGTTGACATGGGCTGCACACTATTACCAATT
TCCTATCGGTGAAGTCATGCAAACAGCTTTGCCTATATTATTACGTCAAGGCAAACCCTATAACTTACTGGCACGGATTT
GGAAAGTGTTAGACTTAAATGCCGAAGACAAAGTCAAACGCTCTGAAAAACAACAAGAAGCCTATAAAATTTTAAAGTTA
CATCCACAAGGTACACAAGAAAATATTTTAAATCTGAGTGGAATCGAAACTGCAACCCTGAAAGCATTAGAAAAGAAAGA
AATTATTATTTGTGATTTAGAGCCACAAAACTTTAAGCCTGAACCTGTTAGTTTGGCGCAAATGCCACTCACTGCCAATG
AAGATCAGAAAAAAGCCATTCAAACTATTTTAAAAGCACAAAAAAAATATCAAGCATTTTTACTGGATGGTTTAACAGGC
AGTGGTAAAACCGAAGTTTATTTACAAGTCATGCAAGAGATTTTAAAACAAGGCAAACAGGTCTTAGTACTTGTGCCTGA
AATCGGCTTAACCCCCCAAACAGTCAGCCGTTTCCAATCTCGTTTTCATTGTAATATTGCGCTACTACATTCAGGTTTAA
ATGATACTAAGCGTCTACAGGCTTGGCAACATAGCGAAACTGGTAAAGCGTCTATTATTTTAGGAACACGTTCTGCGATC
TTTACCCCAATGCCTCATTTGGGTTTGATTATTCTAGATGAAGAACACGATCTTTCGTTCAAACAGCAAGACGGTTTTCG
TTATCATGCTCGAGATGTCGCACTCTATCGTGCCCATCTGGAGAATTGTCCGATTATTTTAGGTTCTGCTACACCAAGTA
TTGACAGTTATTTTCTCGCCCAACAAGGCAAACTCACTCGCTTAGAGCTAAATCAACGTGCTGGTACGGCCATCATGCCT
AAAATGCATGTGATTGATTTAAAAATCAGTAAAAAAACCGCAGGTTTAAGTGAGCAACTGATCAGTGAGATTGGCAAGCG
CTTAGAGAAAAAAGAGCAAGTACTGATTTTTCTCAATCGGCGTGGTTATGCGCCTGTACTGATCTGTGAAAGCTGTGGTT
GGCAAGCCAATTGTCCTCATTGTGATGCACATTTTACCCTACATTTAAAGCCGTATTCACACTTACATTGTCATCACTGC
GGCACCATTAACCGCTTACCTGACGCATGTCCTGCGTGCAATCAAAATACTTTAAAGCCGATTGGAATGGGCACAGCCAA
AGTTGAAGAAGCTTTAAATGAGCTATTTCCAAAATACCCAGTGGTACGTGTAGATCGGGATTCAATCAGTCGTGTCGGCA
GTTGGCAGAAAATTTATGACCAAATCCAAAAAAGTGAACCGACGATTTTACTTGGTACGCAGATGTTGGCAAAAGGACAT
CATTTCCCCTATGTCACTTTGGTTGCGATTTTAGACATAGATGCTGGCTTACTCAGTGTTGACTTTCGAGCAACTGAACG
TACAGCGCAGTTGATCGTGCAAGTGGCGGGTCGTTCAGGACGTGGTGAGAAAAAAGGTGATGTTTATTTACAGACCTTAC
GCCCAGACCATCCGCTACTAAACATATTGTTGGATAAAAATTATCGAGCTTTTGCCAAACAAACCTTAGCAGACCGAAAA
ATAGCAGAAATGCCACCTTATCGTTATGCCGTTTTACTGCGTTGCGAATCGAAAAGTCAGGATGAAAATCAAACCTTCTT
GACAGAAATGACGCAACAATTACGCCTCAATAGTGAGGAAAATTTGATTGATATTTGGGGACCGATTCCTGCACCAATGG
AGCGTAAAGCAGGTCGTTATCAAGCCCATGTTGTACTGTTATCGCATGACCGTGCCAAGATGCATTTTTATATTCGTCAG
TGGTGGCAATATGTGCTTCAGCAAAAACCTTCTCAGATGAAACTGACGATTGATGTAGATCCGCAAGAGTTGAGTTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(646-741)

DEAD/DEAH box helicase (DEAD)

(214-373)

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FA96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.294

99.597

0.71

Multiple sequence alignment