Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DJ533_RS04320 Genome accession   NZ_CP029397
Coordinates   417921..418247 (+) Length   108 a.a.
NCBI ID   WP_065995165.1    Uniprot ID   -
Organism   Acinetobacter defluvii strain WCHA30     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 412921..423247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS04295 (DJ533_04305) hemC 413471..414397 (+) 927 WP_065995174.1 hydroxymethylbilane synthase -
  DJ533_RS04300 (DJ533_04310) - 414397..415179 (+) 783 WP_065995161.1 uroporphyrinogen-III synthase -
  DJ533_RS04305 (DJ533_04315) - 415176..416018 (+) 843 WP_065995162.1 hypothetical protein -
  DJ533_RS04310 (DJ533_04320) - 416023..417219 (+) 1197 WP_065995163.1 hypothetical protein -
  DJ533_RS04315 (DJ533_04325) - 417229..417660 (+) 432 WP_065995164.1 thioesterase family protein -
  DJ533_RS04320 (DJ533_04330) hns 417921..418247 (+) 327 WP_065995165.1 H-NS family nucleoid-associated regulatory protein Regulator
  DJ533_RS04325 (DJ533_04335) gspN 418410..419153 (+) 744 WP_065995166.1 type II secretion system protein N -
  DJ533_RS04330 (DJ533_04340) - 419156..420013 (+) 858 WP_065995167.1 type II secretion system protein N -
  DJ533_RS04335 (DJ533_04345) gspD 420055..422298 (+) 2244 WP_065995168.1 type II secretion system secretin GspD -
  DJ533_RS04340 (DJ533_04350) - 422424..423128 (+) 705 WP_065995169.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12436.14 Da        Isoelectric Point: 7.0201

>NTDB_id=292217 DJ533_RS04320 WP_065995165.1 417921..418247(+) (hns) [Acinetobacter defluvii strain WCHA30]
MMPDISNLSVEELERLTAQAEALIESKKDQKIEDAYNKILEIAESAGLTLEQFIEYGSHKRKKTTRKAVEPRYRNKNNAS
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=292217 DJ533_RS04320 WP_065995165.1 417921..418247(+) (hns) [Acinetobacter defluvii strain WCHA30]
ATGATGCCGGATATTAGTAATCTTTCAGTAGAAGAGTTAGAGCGTTTAACAGCACAAGCAGAGGCATTGATTGAATCAAA
AAAAGATCAAAAAATTGAAGACGCTTATAATAAAATTTTAGAAATTGCTGAATCCGCAGGTTTAACTTTAGAGCAATTTA
TTGAGTATGGTTCACACAAACGTAAAAAAACTACACGTAAAGCAGTAGAACCACGTTATCGCAATAAGAATAATGCTTCA
GAAACGTGGACAGGGCGTGGCAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

79.63

100

0.796

Multiple sequence alignment