Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   APS58_RS11315 Genome accession   NZ_CP029373
Coordinates   2509548..2511137 (+) Length   529 a.a.
NCBI ID   WP_011793602.1    Uniprot ID   A1TJ88
Organism   Paracidovorax citrulli strain M6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504548..2516137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APS58_RS11290 (APS58_2268) argS 2504896..2506605 (+) 1710 WP_017439551.1 arginine--tRNA ligase -
  APS58_RS11295 (APS58_2269) - 2506611..2507258 (+) 648 WP_138919938.1 SPOR domain-containing protein -
  APS58_RS11300 (APS58_2270) - 2507328..2507984 (+) 657 WP_017439849.1 thiol:disulfide interchange protein DsbA/DsbL -
  APS58_RS11305 (APS58_2271) lptA 2508104..2508754 (+) 651 WP_046060320.1 lipopolysaccharide transport periplasmic protein LptA -
  APS58_RS11310 (APS58_2272) lptB 2508757..2509548 (+) 792 WP_046060321.1 LPS export ABC transporter ATP-binding protein -
  APS58_RS11315 (APS58_2273) rpoN/rpoN1 2509548..2511137 (+) 1590 WP_011793602.1 RNA polymerase factor sigma-54 Machinery gene
  APS58_RS11320 (APS58_2274) - 2511162..2511704 (-) 543 WP_046060446.1 TspO/MBR family protein -
  APS58_RS11325 (APS58_2275) - 2511765..2513621 (-) 1857 WP_046060322.1 methyl-accepting chemotaxis protein -
  APS58_RS11330 (APS58_2276) - 2513777..2515102 (+) 1326 WP_046060323.1 THUMP domain-containing protein -
  APS58_RS11335 (APS58_2277) - 2515092..2515574 (+) 483 WP_017440101.1 putative toxin-antitoxin system toxin component, PIN family -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 57887.10 Da        Isoelectric Point: 4.6032

>NTDB_id=292141 APS58_RS11315 WP_011793602.1 2509548..2511137(+) (rpoN/rpoN1) [Paracidovorax citrulli strain M6]
MKPGLSLRISQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERNPDEAPREEFGLLQADAPVSDADRGAEESLY
SPASGAVETAASAPGEGASEGSEAPEAPDAPDWEGDGTVEMAPDDGEWGGEAPARTRNQLGDEDDTDATELAREHESLTD
YLHRQALSLRLSEVDRAALRFLIESLNDDGYLDESLEALAVALAGEEDPEQVEELVHRFTVALRLLQSLEPVGVGARGLS
ECLALQLRALQEDGDAEPEVLQAALRICNQPLEMLARRDVRRLAQGCGAGEECTRAAMALIARLEPRPGRAFAQVERNII
VPDVIVKKSSGRGAAHAFTVQLNPDVMPRLRVHDIYAGALRGNRGGEGHQALQQRLQEARWFIKNIQQRFDTILRVSRAI
VDRQKNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQF
VASESPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=292141 APS58_RS11315 WP_011793602.1 2509548..2511137(+) (rpoN/rpoN1) [Paracidovorax citrulli strain M6]
ATGAAGCCGGGACTGTCGCTGCGCATCTCGCAGCATCTGGCGCTGACGCCGCAACTGCAGCAATCGATCCGGCTGCTGCA
GCTGTCCACGCTGGAGCTGTCGCAGGAAGTCGAGCAGATGCTCGACGAGAACCCCTTCCTGGAGCGCAACCCGGACGAGG
CACCGCGCGAGGAGTTCGGGCTGCTGCAGGCGGATGCGCCGGTGAGCGACGCCGACCGCGGGGCGGAGGAGTCCCTCTAT
TCGCCGGCCAGCGGGGCGGTGGAGACGGCGGCCTCGGCGCCGGGCGAGGGCGCATCCGAAGGATCGGAGGCGCCGGAAGC
TCCCGATGCGCCGGACTGGGAGGGCGACGGCACCGTCGAGATGGCGCCCGACGACGGCGAGTGGGGCGGCGAGGCGCCCG
CGCGCACGCGCAACCAGCTGGGGGACGAAGACGACACGGACGCGACCGAACTCGCGCGCGAGCACGAGTCGCTCACCGAT
TACCTGCACCGGCAGGCGCTGTCGCTGCGCCTGTCGGAGGTGGACCGCGCGGCGCTGCGCTTCCTGATCGAATCGCTGAA
CGACGACGGCTACCTCGACGAATCGCTGGAGGCACTGGCCGTGGCCCTCGCGGGCGAGGAAGACCCCGAGCAGGTGGAGG
AACTGGTGCATCGCTTCACGGTGGCGCTGCGGCTGCTGCAGAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGGCCTGAGC
GAATGCCTGGCGCTGCAGCTGCGGGCCCTGCAGGAAGATGGCGACGCGGAGCCCGAAGTGCTGCAGGCGGCGCTGCGCAT
CTGCAATCAGCCGCTGGAGATGCTGGCGCGGCGCGACGTGCGCCGGCTCGCGCAGGGTTGCGGTGCCGGCGAGGAGTGCA
CGCGCGCGGCGATGGCGCTCATCGCGCGGCTGGAGCCCCGGCCGGGCCGGGCTTTCGCGCAGGTCGAGCGCAACATCATC
GTGCCCGACGTGATCGTGAAGAAGAGCAGTGGCCGCGGGGCCGCGCATGCGTTCACCGTGCAGCTCAACCCGGATGTCAT
GCCGCGGCTGCGCGTGCACGACATCTATGCCGGGGCGCTGCGCGGCAACCGCGGCGGCGAGGGGCACCAGGCGCTGCAGC
AGCGGCTGCAGGAAGCGCGTTGGTTCATCAAGAACATCCAGCAGCGGTTCGACACCATCCTGCGCGTCTCGCGCGCCATC
GTGGACCGGCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGGCCGCTCGTGCTGCGCGACATCGCCGACGAGCT
GGGGCTGCACGAATCGACGATCAGCCGGGTGACCACGGCCAAGTACATGGCCACGCCCCAGGGTACCTACGAGCTGAAGT
ATTTCTTCGGCTCGGGCCTGGGCACGGAAACGGGCGGCAATGCGTCGAGCACGGCCGTGCGTGCGCTGATCAAGCAGTTC
GTCGCGTCGGAGAGCCCGGCCAAGCCGCTGTCGGACAGCCAGATCGCGGAGATGCTCAAGGAGCAGGGCATCGAATGCGC
GCGCCGCACGGTGGCGAAATACCGCGAGGCGCTGAAGATCGCACCGGCCAACCTGCGCAAGGCGCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-356)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(371-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TJ88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.731

100

0.529

Multiple sequence alignment