Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DI243_RS22145 Genome accession   NZ_CP029370
Coordinates   5012290..5013663 (-) Length   457 a.a.
NCBI ID   WP_013373291.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain CJX518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5007290..5018663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI243_RS22120 (DI243_22355) ispF 5007882..5008358 (-) 477 WP_040102785.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DI243_RS22125 (DI243_22360) ispD 5008355..5009053 (-) 699 WP_040102784.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DI243_RS22130 (DI243_22365) - 5009124..5010209 (-) 1086 WP_040102783.1 PIN/TRAM domain-containing protein -
  DI243_RS22135 (DI243_22370) pssA 5010400..5011146 (-) 747 WP_040102782.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  DI243_RS22140 (DI243_22375) disA 5011201..5012277 (-) 1077 WP_040102781.1 DNA integrity scanning diadenylate cyclase DisA -
  DI243_RS22145 (DI243_22380) radA 5012290..5013663 (-) 1374 WP_013373291.1 DNA repair protein RadA Machinery gene
  DI243_RS22150 (DI243_22385) clpC 5013907..5016351 (-) 2445 WP_016818634.1 ATP-dependent protease ATP-binding subunit ClpC -
  DI243_RS22155 (DI243_22390) - 5016396..5017460 (-) 1065 WP_013373293.1 protein arginine kinase -
  DI243_RS22160 (DI243_22395) - 5017490..5018014 (-) 525 WP_013373294.1 UvrB/UvrC motif-containing protein -
  DI243_RS22165 (DI243_22400) - 5018099..5018563 (-) 465 WP_013373295.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49242.94 Da        Isoelectric Point: 6.7620

>NTDB_id=292062 DI243_RS22145 WP_013373291.1 5012290..5013663(-) (radA) [Paenibacillus polymyxa strain CJX518]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=292062 DI243_RS22145 WP_013373291.1 5012290..5013663(-) (radA) [Paenibacillus polymyxa strain CJX518]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGCTATGAATCGCCTAAATGGTACGGAAAATGCCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGATCTTCCCTTCTTACTCATA
GCACAAAAGACAAACCGCTTCCTATTATTGAAGTGGAAAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGTGAATTA
AATCGTGTACTTGGTGGAGGTGTGGTGCCAGGTTCACTTGTTCTGGTGGGTGGTGATCCGGGGATCGGCAAGTCTACGCT
TATGCTGCAAACCTCTAATGAGCTGGCTTTAACTGGTTTAAAGGTTCTGTACGTGTCTGGTGAGGAATCCGTCCGCCAAA
CAAAGCTACGTGCAGATCGCCTCGGTGCCTTGTCTCCCAGTCTGTACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCAGTGGACAGCTTGAAGCCAGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTACCTGAGGTGACAAGTGC
GCCTGGTAGTGTAGCACAGGTGCGCGAGTGTACTTCACGATTTATGCGGATTGCCAAAGGATTAGGTATTGCTACAGTAC
TGGTAGGGCATGTGACCAAGGAAGGCGCTATTGCAGGTCCGCGTTTGTTGGAGCATATGGTCGATTGTGTACTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTGTTGCGTGCGGTTAAGAATCGCTTTGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCCGAAAGTGGTTTGCGTGAGGTGGCGAATCCTTCTGAACTTTTCTTGTCCGAACGGCCACTGGGGGTGGCAG
GTTCCACCGTCGTTGCCAGTATGGAGGGAACCCGACCTGTATTGGTTGAACTGCAAGCACTAATTGCAGCTACACATTTC
CCATCTCCACGCCGAATGGGTACGGGGATCGACCATCATCGGATGGGATTAATCATTGCCGTCCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTTGCTGGAGGCGTAAAGCTGGATGAACCAGCGGTGGATTTAGCTA
TAGCGGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGATGTGATTTTTGGTGAAGTAGGACTGACA
GGCGAGGTGCGGGCTGTATCCCGAGCAGAACAGCGAGTGCGAGAAGCGGAGAAGTTAGGTTTCAAACGGGTGATCATGCC
CGAGAAAAGCTTAAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTTGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(350-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.249

100

0.674
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58

Multiple sequence alignment