Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECIAI39_RS05155 Genome accession   NC_011750
Coordinates   1082022..1082498 (-) Length   158 a.a.
NCBI ID   WP_012602267.1    Uniprot ID   -
Organism   Escherichia coli IAI39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077022..1087498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI39_RS05105 (ECIAI39_1009) sbmC 1077515..1077988 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  ECIAI39_RS05110 (ECIAI39_1010) yeeA 1078186..1079244 (+) 1059 WP_001200891.1 FUSC family protein -
  ECIAI39_RS05115 (ECIAI39_1011) tmaR 1079416..1079745 (+) 330 WP_000450409.1 DUF496 family protein -
  ECIAI39_RS05120 - 1079846..1080031 (-) 186 Protein_1005 EutP/PduV family microcompartment system protein -
  ECIAI39_RS05125 - 1080082..1080228 (+) 147 Protein_1006 transposase domain-containing protein -
  ECIAI39_RS05130 - 1080517..1080597 (-) 81 Protein_1007 hypothetical protein -
  ECIAI39_RS05135 (ECIAI39_1012) yeeW 1080643..1080837 (-) 195 WP_000988600.1 DUF5983 family protein -
  ECIAI39_RS05140 (ECIAI39_1013) - 1080899..1081207 (-) 309 Protein_1009 TA system toxin CbtA family protein -
  ECIAI39_RS05145 (ECIAI39_1014) - 1081296..1081601 (-) 306 WP_044863316.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECIAI39_RS05150 (ECIAI39_1015) yeeT 1081738..1081959 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECIAI39_RS05155 (ECIAI39_1016) radC 1082022..1082498 (-) 477 WP_012602267.1 RadC family protein Machinery gene
  ECIAI39_RS05160 (ECIAI39_1017) - 1082513..1082992 (-) 480 WP_000860066.1 antirestriction protein -
  ECIAI39_RS05165 (ECIAI39_1018) - 1083074..1083895 (-) 822 WP_001234572.1 DUF932 domain-containing protein -
  ECIAI39_RS25300 - 1084080..1084169 (-) 90 Protein_1015 DUF905 family protein -
  ECIAI39_RS05175 (ECIAI39_1019) - 1084289..1084783 (-) 495 Protein_1016 hypothetical protein -
  ECIAI39_RS24920 (ECIAI39_1021) - 1085216..1085440 (-) 225 WP_012602268.1 hypothetical protein -
  ECIAI39_RS24925 (ECIAI39_1022) - 1085430..1085774 (-) 345 WP_000668903.1 hypothetical protein -
  ECIAI39_RS05185 (ECIAI39_1023) - 1085909..1086979 (-) 1071 WP_000102648.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17559.22 Da        Isoelectric Point: 7.6542

>NTDB_id=29203 ECIAI39_RS05155 WP_012602267.1 1082022..1082498(-) (radC) [Escherichia coli IAI39]
MQQLSFLPGAMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPGKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29203 ECIAI39_RS05155 WP_012602267.1 1082022..1082498(-) (radC) [Escherichia coli IAI39]
ATGCAGCAGCTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAACGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAGGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCTGGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.097

71.519

0.38

Multiple sequence alignment