Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DI496_RS16520 Genome accession   NZ_CP029369
Coordinates   2871188..2871817 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WCHEC035148     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866188..2876817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI496_RS16505 (DI496_16505) helD 2866430..2868484 (-) 2055 WP_000420536.1 DNA helicase IV -
  DI496_RS16510 (DI496_16510) yccF 2868607..2869053 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DI496_RS16515 (DI496_16515) yccS 2869063..2871225 (+) 2163 WP_000875023.1 YccS family putative transporter -
  DI496_RS16520 (DI496_16520) sxy/tfoX 2871188..2871817 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DI496_RS16525 (DI496_16525) sulA 2872036..2872545 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DI496_RS16535 (DI496_16535) ompA 2872902..2873954 (+) 1053 WP_001361736.1 porin OmpA -
  DI496_RS16540 (DI496_16540) matP 2874030..2874482 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DI496_RS16545 (DI496_16545) ycbZ 2874668..2876428 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=292029 DI496_RS16520 WP_000839153.1 2871188..2871817(-) (sxy/tfoX) [Escherichia coli strain WCHEC035148]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=292029 DI496_RS16520 WP_000839153.1 2871188..2871817(-) (sxy/tfoX) [Escherichia coli strain WCHEC035148]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment