Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DIC78_RS21095 Genome accession   NZ_CP029364
Coordinates   4051119..4052249 (-) Length   376 a.a.
NCBI ID   WP_127696870.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4046119..4057249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS21690 - 4047107..4047191 (-) 85 Protein_4088 putative holin-like toxin -
  DIC78_RS21085 (DIC78_21105) ppsA 4047702..4050305 (+) 2604 WP_127696869.1 phosphoenolpyruvate synthase -
  DIC78_RS21090 (DIC78_21110) - 4050600..4050946 (+) 347 Protein_4090 UV damage repair protein UvrX -
  DIC78_RS21625 - 4050986..4051129 (-) 144 WP_024121692.1 hypothetical protein -
  DIC78_RS21095 (DIC78_21115) rapC 4051119..4052249 (-) 1131 WP_127696870.1 tetratricopeptide repeat protein Regulator
  DIC78_RS22230 - 4052383..4052427 (-) 45 WP_372588338.1 hypothetical protein -
  DIC78_RS21110 (DIC78_21130) - 4052752..4053012 (-) 261 WP_127696871.1 hypothetical protein -
  DIC78_RS21115 (DIC78_21135) - 4053360..4053593 (+) 234 WP_106022513.1 hypothetical protein -
  DIC78_RS21120 (DIC78_21140) - 4053687..4054166 (+) 480 WP_223203877.1 hypothetical protein -
  DIC78_RS21940 - 4054438..4054583 (+) 146 Protein_4097 XRE family transcriptional regulator -
  DIC78_RS22035 - 4054970..4055041 (+) 72 WP_404506174.1 hypothetical protein -
  DIC78_RS22040 - 4055157..4055216 (+) 60 WP_255004945.1 hypothetical protein -
  DIC78_RS21130 (DIC78_21150) - 4055224..4055454 (-) 231 WP_127696872.1 hypothetical protein -
  DIC78_RS21135 (DIC78_21155) - 4055956..4056579 (+) 624 WP_024571441.1 hypothetical protein -
  DIC78_RS21140 (DIC78_21160) - 4056667..4056846 (-) 180 WP_106022516.1 hypothetical protein -
  DIC78_RS21145 (DIC78_21165) - 4056917..4057168 (+) 252 Protein_4103 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44294.09 Da        Isoelectric Point: 6.1971

>NTDB_id=292015 DIC78_RS21095 WP_127696870.1 4051119..4052249(-) (rapC) [Bacillus halotolerans strain ZB201702]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEAEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGIEKAKAINDDVLMAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=292015 DIC78_RS21095 WP_127696870.1 4051119..4052249(-) (rapC) [Bacillus halotolerans strain ZB201702]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGCTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAATCGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATGGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452

Multiple sequence alignment