Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DIC78_RS20295 Genome accession   NZ_CP029364
Coordinates   3915221..3915841 (-) Length   206 a.a.
NCBI ID   WP_024121833.1    Uniprot ID   A0A9Q6A9A0
Organism   Bacillus halotolerans strain ZB201702     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3910221..3920841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS20275 (DIC78_20300) dnaD 3910512..3911210 (+) 699 WP_044155229.1 DNA replication protein DnaD -
  DIC78_RS20280 (DIC78_20305) nth 3911229..3911888 (+) 660 WP_010334708.1 endonuclease III -
  DIC78_RS20285 (DIC78_20310) - 3911885..3912379 (+) 495 WP_103671772.1 YpoC family protein -
  DIC78_RS20290 (DIC78_20315) - 3912452..3915199 (-) 2748 WP_106020013.1 PBP1A family penicillin-binding protein -
  DIC78_RS20295 (DIC78_20320) recU 3915221..3915841 (-) 621 WP_024121833.1 Holliday junction resolvase RecU Machinery gene
  DIC78_RS20300 (DIC78_20325) - 3915882..3916844 (+) 963 WP_106020012.1 DUF2515 domain-containing protein -
  DIC78_RS20305 (DIC78_20330) sspM 3916870..3916974 (-) 105 WP_010334703.1 acid-soluble spore protein SspM -
  DIC78_RS20310 (DIC78_20335) - 3917172..3917417 (+) 246 WP_095713163.1 DUF5446 family protein -
  DIC78_RS20315 (DIC78_20340) - 3917463..3917834 (+) 372 WP_024121830.1 YppE family protein -
  DIC78_RS20320 (DIC78_20345) - 3917869..3918057 (-) 189 WP_106020011.1 YppF family protein -
  DIC78_RS20325 (DIC78_20350) - 3918245..3918619 (+) 375 WP_024121828.1 YppG family protein -
  DIC78_RS20330 (DIC78_20355) - 3918641..3919060 (-) 420 WP_106020010.1 Hsp20/alpha crystallin family protein -
  DIC78_RS20335 (DIC78_20360) - 3919197..3919703 (+) 507 WP_106020332.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23934.13 Da        Isoelectric Point: 9.7224

>NTDB_id=292014 DIC78_RS20295 WP_024121833.1 3915221..3915841(-) (recU) [Bacillus halotolerans strain ZB201702]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADKLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=292014 DIC78_RS20295 WP_024121833.1 3915221..3915841(-) (recU) [Bacillus halotolerans strain ZB201702]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGTCAGGTTTATTTTTTAGAAGCCGATAAGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.087

100

0.971

Multiple sequence alignment