Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DIC78_RS19305 Genome accession   NZ_CP029364
Coordinates   3735066..3736796 (+) Length   576 a.a.
NCBI ID   WP_069487198.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3730066..3741796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS19280 (DIC78_19305) - 3730429..3730683 (+) 255 WP_024122010.1 exodeoxyribonuclease VII small subunit -
  DIC78_RS19285 (DIC78_19310) - 3730673..3731563 (+) 891 WP_127696778.1 polyprenyl synthetase family protein -
  DIC78_RS19290 (DIC78_19315) dxs 3731741..3733642 (+) 1902 WP_024122007.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DIC78_RS19295 (DIC78_19320) - 3733639..3734484 (+) 846 WP_127696779.1 TlyA family RNA methyltransferase -
  DIC78_RS19300 (DIC78_19325) argR 3734581..3735030 (+) 450 WP_010334883.1 arginine repressor ArgR -
  DIC78_RS19305 (DIC78_19330) recN 3735066..3736796 (+) 1731 WP_069487198.1 DNA repair protein RecN Machinery gene
  DIC78_RS19310 (DIC78_19335) spoIVB 3736971..3738248 (+) 1278 WP_024122004.1 SpoIVB peptidase -
  DIC78_RS19315 (DIC78_19340) spo0A 3738524..3739327 (+) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  DIC78_RS19325 (DIC78_19350) - 3739892..3741010 (-) 1119 WP_127696780.1 NADH-dependent flavin oxidoreductase -
  DIC78_RS19330 - 3741083..3741217 (-) 135 WP_024122000.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64674.42 Da        Isoelectric Point: 4.6801

>NTDB_id=292012 DIC78_RS19305 WP_069487198.1 3735066..3736796(+) (recN) [Bacillus halotolerans strain ZB201702]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RTATRGEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=292012 DIC78_RS19305 WP_069487198.1 3735066..3736796(+) (recN) [Bacillus halotolerans strain ZB201702]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAACTGGAAGAAATCGAATCAGCAAAGCTCGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCAAATTTCGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAGCGCTTGAATTTTATTGAGACGCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTGGAAGCGGCAAACGTTTCCCGAATCCGAAAAACGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAACGGCGACCCGCGGTGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTCGAAGTCACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958

Multiple sequence alignment