Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DIC78_RS18785 Genome accession   NZ_CP029364
Coordinates   3648200..3648967 (+) Length   255 a.a.
NCBI ID   WP_127696758.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3643200..3653967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS18755 (DIC78_18780) pgpH 3643499..3645634 (+) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -
  DIC78_RS18760 (DIC78_18785) ybeY 3645635..3646108 (+) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  DIC78_RS18765 (DIC78_18790) - 3646089..3646466 (+) 378 WP_101864544.1 diacylglycerol kinase family protein -
  DIC78_RS18770 (DIC78_18795) cdd 3646580..3646990 (+) 411 WP_024122088.1 cytidine deaminase -
  DIC78_RS18775 (DIC78_18800) era 3646971..3647876 (+) 906 WP_101864543.1 GTPase Era -
  DIC78_RS18780 (DIC78_18805) - 3648020..3648163 (+) 144 WP_024122087.1 YqzL family protein -
  DIC78_RS18785 (DIC78_18810) recO 3648200..3648967 (+) 768 WP_127696758.1 DNA repair protein RecO Machinery gene
  DIC78_RS18790 (DIC78_18815) glyQ 3649264..3650151 (+) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  DIC78_RS18795 (DIC78_18820) glyS 3650144..3652183 (+) 2040 WP_127696759.1 glycine--tRNA ligase subunit beta -
  DIC78_RS18800 (DIC78_18825) ccpN 3652317..3652955 (+) 639 WP_024122084.1 transcriptional regulator CcpN -
  DIC78_RS18805 (DIC78_18830) - 3652981..3653793 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29323.00 Da        Isoelectric Point: 8.3105

>NTDB_id=292002 DIC78_RS18785 WP_127696758.1 3648200..3648967(+) (recO) [Bacillus halotolerans strain ZB201702]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQSFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=292002 DIC78_RS18785 WP_127696758.1 3648200..3648967(+) (recO) [Bacillus halotolerans strain ZB201702]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGTCCTTTT
TGTATGGTTCATTCCTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTATCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941

Multiple sequence alignment