Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DIC78_RS18535 Genome accession   NZ_CP029364
Coordinates   3604973..3605398 (+) Length   141 a.a.
NCBI ID   WP_127696748.1    Uniprot ID   A0A9Q4EJ26
Organism   Bacillus halotolerans strain ZB201702     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3599973..3610398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS18510 (DIC78_18535) - 3600800..3600972 (+) 173 Protein_3574 recombinase family protein -
  DIC78_RS18515 (DIC78_18540) - 3601115..3602332 (-) 1218 WP_106020130.1 CynX/NimT family MFS transporter -
  DIC78_RS18520 (DIC78_18545) - 3602476..3603033 (+) 558 WP_101861070.1 helix-turn-helix domain-containing protein -
  DIC78_RS22220 - 3603658..3603825 (+) 168 Protein_3577 hypothetical protein -
  DIC78_RS18530 (DIC78_18560) sigK 3604068..3604796 (-) 729 WP_206197101.1 RNA polymerase sporulation sigma factor SigK -
  DIC78_RS18535 (DIC78_18565) nucA/comI 3604973..3605398 (+) 426 WP_127696748.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DIC78_RS18540 (DIC78_18570) - 3605432..3606160 (-) 729 WP_127696749.1 DUF308 domain-containing protein -
  DIC78_RS18545 (DIC78_18575) gnd 3606481..3607374 (+) 894 WP_127696750.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  DIC78_RS18550 (DIC78_18580) - 3607396..3608022 (-) 627 WP_024122122.1 TVP38/TMEM64 family protein -
  DIC78_RS18555 (DIC78_18585) - 3608217..3608969 (+) 753 WP_127696751.1 N-acetylmuramoyl-L-alanine amidase -
  DIC78_RS18560 (DIC78_18590) - 3609216..3609947 (+) 732 WP_105953571.1 SGNH/GDSL hydrolase family protein -
  DIC78_RS22025 - 3610025..3610159 (+) 135 WP_010335019.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15528.68 Da        Isoelectric Point: 5.2215

>NTDB_id=291998 DIC78_RS18535 WP_127696748.1 3604973..3605398(+) (nucA/comI) [Bacillus halotolerans strain ZB201702]
MKRWMAMLLLAAAVFLCLLGKDMTAPQQAKGAALYDKILYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=291998 DIC78_RS18535 WP_127696748.1 3604973..3605398(+) (nucA/comI) [Bacillus halotolerans strain ZB201702]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTTGTTTGTTGGGAAAGGATATGACGGCTCCGCA
ACAGGCCAAGGGGGCTGCTTTATATGACAAAATTTTATACTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCAACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGTGCCGGAGCCGA
TGTACGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTCGGAAATCAAATGAGCAGTTATCCAGATGGTA
CCAAAGTATTGTTTATTGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.29

87.943

0.539

Multiple sequence alignment