Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DIC78_RS17570 Genome accession   NZ_CP029364
Coordinates   3432239..3432985 (+) Length   248 a.a.
NCBI ID   WP_127696691.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427239..3437985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS17555 (DIC78_17590) - 3427464..3427655 (-) 192 WP_024122364.1 hypothetical protein -
  DIC78_RS17560 (DIC78_17595) valS 3428104..3430746 (+) 2643 WP_127696689.1 valine--tRNA ligase -
  DIC78_RS17565 (DIC78_17600) - 3430806..3432098 (+) 1293 WP_127696690.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  DIC78_RS17570 (DIC78_17605) comC 3432239..3432985 (+) 747 WP_127696691.1 prepilin peptidase Machinery gene
  DIC78_RS17575 (DIC78_17610) - 3433118..3434116 (+) 999 WP_105953484.1 SPOR domain-containing protein -
  DIC78_RS17580 (DIC78_17615) - 3434267..3434836 (+) 570 WP_024122358.1 Maf family nucleotide pyrophosphatase -
  DIC78_RS17585 (DIC78_17620) radC 3434874..3435569 (+) 696 WP_024122357.1 RadC family protein -
  DIC78_RS17590 (DIC78_17625) mreB 3435661..3436674 (+) 1014 WP_010335164.1 cell shape-determining protein MreB -
  DIC78_RS17595 (DIC78_17630) mreC 3436705..3437577 (+) 873 WP_024122356.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26574.07 Da        Isoelectric Point: 9.7865

>NTDB_id=291994 DIC78_RS17570 WP_127696691.1 3432239..3432985(+) (comC) [Bacillus halotolerans strain ZB201702]
MIQILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALVFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=291994 DIC78_RS17570 WP_127696691.1 3432239..3432985(+) (comC) [Bacillus halotolerans strain ZB201702]
ATGATTCAGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCAGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGGTGTTTCTATCTCTTCTAAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCAGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATTGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.242

100

0.802

Multiple sequence alignment