Detailed information NTG0291977

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: DIC78_RS12215
• Genome accession: NZ_CP029364
• Coordinates: 2392330..2393475 (-)
• Length: 381 a.a.
• NCBI ID: WP_127696377.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain ZB201702
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2387330..2398475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DIC78_RS12190 (DIC78_12220)	-	2387626..2388048 (+)	423	WP_127696375.1	hypothetical protein	-
DIC78_RS12195 (DIC78_12225)	-	2388081..2390156 (-)	2076	WP_127696376.1	transglycosylase domain-containing protein	-
DIC78_RS12200 (DIC78_12230)	speE	2390357..2391187 (+)	831	WP_064815948.1	spermidine synthase	-
DIC78_RS12205 (DIC78_12235)	speB	2391248..2392120 (+)	873	WP_101864909.1	agmatinase	-
DIC78_RS12210 (DIC78_12240)	-	2392227..2392346 (-)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
DIC78_RS12215 (DIC78_12245)	rapF	2392330..2393475 (-)	1146	WP_127696377.1	tetratricopeptide repeat protein	Regulator
DIC78_RS12225 (DIC78_12255)	-	2393704..2395062 (+)	1359	WP_106019735.1	YncE family protein	-
DIC78_RS22175	-	2395103..2395270 (+)	168	Protein_2354	YncE family protein	-
DIC78_RS12230 (DIC78_12260)	-	2395262..2395618 (+)	357	Protein_2355	YncE family protein	-
DIC78_RS12235 (DIC78_12265)	-	2395625..2396326 (-)	702	WP_127696378.1	bacteriocin biosynthesis protein AlbG	-
DIC78_RS12240 (DIC78_12270)	-	2396323..2397600 (-)	1278	WP_127696379.1	M16 family metallopeptidase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45603.12 Da
• Isoelectric Point: 4.7570

>NTDB_id=291977 DIC78_RS12215 WP_127696377.1 2392330..2393475(-) (rapF) [Bacillus halotolerans strain ZB201702]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAAQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMLPSLPQAFFLITQIYFKLGKIDNACEYHKEGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=291977 DIC78_RS12215 WP_127696377.1 2392330..2393475(-) (rapF) [Bacillus halotolerans strain ZB201702]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
AGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCACGA
CTGTCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGACCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTG
TTAAAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCT
ATGGACTATGCACGTCAAGCCTTTGAAATATACAACGAACAAACTACATATGATATCAGAATGATTCAATGCCAATCCCT
GTTTGGAGCTAACTTTTTGGATCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGG
CGGCACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGTCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGAATCGAAAATGCTTCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAGAAGGAAGAGAATATTCAATAG
CTGCCGGAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAGGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGCAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (193-213)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57