Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DIC78_RS10205 Genome accession   NZ_CP029364
Coordinates   2005071..2006183 (-) Length   370 a.a.
NCBI ID   WP_024123582.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1981164..2007682 2005071..2006183 within 0


Gene organization within MGE regions


Location: 1981164..2007682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS10090 (DIC78_10100) dnaX 1981164..1982858 (-) 1695 WP_024123597.1 DNA polymerase III subunit gamma/tau -
  DIC78_RS10100 (DIC78_10110) tadA 1983334..1983819 (-) 486 WP_024123596.1 tRNA adenosine(34) deaminase TadA -
  DIC78_RS10105 (DIC78_10115) - 1983903..1984454 (+) 552 WP_127696188.1 isochorismatase family cysteine hydrolase -
  DIC78_RS10110 (DIC78_10120) - 1984517..1985800 (+) 1284 WP_038954334.1 glycosyl hydrolase family 18 protein -
  DIC78_RS10115 (DIC78_10125) dgk 1985899..1986522 (+) 624 WP_105955735.1 deoxyguanosine kinase -
  DIC78_RS10120 (DIC78_10130) dck 1986519..1987172 (+) 654 WP_024123592.1 deoxyadenosine/deoxycytidine kinase -
  DIC78_RS10130 (DIC78_10140) serS 1987511..1988788 (-) 1278 WP_127696190.1 serine--tRNA ligase -
  DIC78_RS10135 (DIC78_10145) pdxT 1989120..1989710 (-) 591 WP_127696192.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  DIC78_RS10140 (DIC78_10150) pdxS 1989731..1990615 (-) 885 WP_024123589.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  DIC78_RS10145 (DIC78_10155) dacA 1990812..1992143 (-) 1332 WP_127696194.1 D-alanyl-D-alanine carboxypeptidase -
  DIC78_RS10150 (DIC78_10160) guaB 1992298..1993764 (-) 1467 WP_024123587.1 IMP dehydrogenase -
  DIC78_RS10155 (DIC78_10165) - 1993885..1994835 (+) 951 WP_095714850.1 YaaC family protein -
  DIC78_RS10185 (DIC78_10195) gyrA 2000153..2002624 (-) 2472 WP_024123585.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  DIC78_RS10195 (DIC78_10205) gyrB 2002836..2004752 (-) 1917 WP_024123584.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DIC78_RS10200 (DIC78_10210) remB 2004808..2005053 (-) 246 WP_024123583.1 extracellular matrix regulator RemB -
  DIC78_RS10205 (DIC78_10215) recF 2005071..2006183 (-) 1113 WP_024123582.1 DNA replication/repair protein RecF Machinery gene
  DIC78_RS10210 (DIC78_10220) rlbA 2006199..2006414 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  DIC78_RS10215 (DIC78_10225) dnaN 2006546..2007682 (-) 1137 WP_024123581.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42434.44 Da        Isoelectric Point: 7.0882

>NTDB_id=291973 DIC78_RS10205 WP_024123582.1 2005071..2006183(-) (recF) [Bacillus halotolerans strain ZB201702]
MYIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=291973 DIC78_RS10205 WP_024123582.1 2005071..2006183(-) (recF) [Bacillus halotolerans strain ZB201702]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTATGAACATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCTCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGAGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGCGCCCTCAACACCATCATGTTTGCACCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGAT
TTCTTGACATGGAAATCGGCCAAGTTTCTCCTGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAGTTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAATTGACGCTGAAGTACCATACGGCGCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGGTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAACTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.108

100

0.981

Multiple sequence alignment