Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DIC78_RS08245 Genome accession   NZ_CP029364
Coordinates   1638588..1639025 (+) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1633588..1644025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS08225 (DIC78_08235) hxlR 1634776..1635138 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  DIC78_RS08230 (DIC78_08240) hxlA 1635370..1636002 (+) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  DIC78_RS08235 (DIC78_08245) hxlB 1636008..1636565 (+) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  DIC78_RS08240 (DIC78_08250) tlpC 1636678..1638390 (+) 1713 WP_127696000.1 methyl-accepting chemotaxis protein TlpC -
  DIC78_RS08245 (DIC78_08255) nucA/comI 1638588..1639025 (+) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  DIC78_RS08250 (DIC78_08260) nin/comJ 1639052..1639450 (+) 399 WP_127696002.1 competence protein ComJ Regulator
  DIC78_RS08255 (DIC78_08265) - 1639486..1640919 (-) 1434 WP_127696004.1 glycoside hydrolase family 1 protein -
  DIC78_RS08260 (DIC78_08270) - 1640992..1641720 (-) 729 WP_127696006.1 AAA family ATPase -
  DIC78_RS08265 (DIC78_08275) - 1641872..1642207 (-) 336 WP_095714430.1 YckD family protein -
  DIC78_RS08270 (DIC78_08280) - 1642289..1642714 (-) 426 WP_164848148.1 RDD family protein -
  DIC78_RS08275 (DIC78_08285) - 1642757..1643893 (-) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=291966 DIC78_RS08245 WP_024120178.1 1638588..1639025(+) (nucA/comI) [Bacillus halotolerans strain ZB201702]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=291966 DIC78_RS08245 WP_024120178.1 1638588..1639025(+) (nucA/comI) [Bacillus halotolerans strain ZB201702]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTACCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917

Multiple sequence alignment