Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   DIC78_RS03805 Genome accession   NZ_CP029364
Coordinates   758784..759935 (-) Length   383 a.a.
NCBI ID   WP_106020543.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 753784..764935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS03775 (DIC78_03790) - 753926..754657 (+) 732 WP_167492245.1 lytic transglycosylase domain-containing protein -
  DIC78_RS03780 (DIC78_03795) - 754914..755312 (+) 399 WP_010333756.1 thiol management oxidoreductase -
  DIC78_RS03785 (DIC78_03800) spxH 755309..756208 (+) 900 WP_024120926.1 protease adaptor protein SpxH -
  DIC78_RS03795 (DIC78_03810) - 756522..756689 (+) 168 WP_024120925.1 hypothetical protein -
  DIC78_RS03800 (DIC78_03815) pepF 756725..758554 (-) 1830 WP_167492246.1 oligoendopeptidase F -
  DIC78_RS03805 (DIC78_03820) coiA 758784..759935 (-) 1152 WP_106020543.1 competence protein CoiA family protein Machinery gene
  DIC78_RS03810 (DIC78_03825) mecA 760093..760749 (-) 657 WP_127695466.1 adaptor protein MecA Regulator
  DIC78_RS03815 - 760716..760841 (-) 126 WP_120698858.1 hypothetical protein -
  DIC78_RS03820 (DIC78_03830) - 761028..761684 (+) 657 WP_044156385.1 TerC family protein -
  DIC78_RS03825 (DIC78_03835) spx 761727..762122 (-) 396 WP_024120919.1 transcriptional regulator Spx -
  DIC78_RS03830 (DIC78_03840) - 762302..762880 (-) 579 WP_010333747.1 GNAT family N-acetyltransferase -
  DIC78_RS03835 (DIC78_03845) - 763046..764263 (-) 1218 WP_127695468.1 MFS transporter -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44708.84 Da        Isoelectric Point: 9.8371

>NTDB_id=291948 DIC78_RS03805 WP_106020543.1 758784..759935(-) (coiA) [Bacillus halotolerans strain ZB201702]
MFSAVTEDGQVFHLIGRQRREQLKQTRFFCPVCAEELDVKLGSQKAPHFAHKQNKSCTIDIEPESAYHLEGKRQLYVWLK
TQKASPLLEPYVKEIKQRPDILAKVKGDTLAVEYQCATLAPDVFQKRTAGFKQAGLIPQWILGGSRLKRTSSSFYQLSAF
HWQFINASPNSDLLCYCPETHSFLRLSRMIPFYTTHFYCSVQTIPIRQAAAEDLFCTEPDSSFKHSDWTGAILRFRRKTH
RFLSKDMNRIRLLFYEKRQTPLSFLPTEVFVPVKKGAVFKSPVFVWQGYLYLFITDLGYKHAPIRFSAVLQHCKIHIHKK
NILLRGVYRDQDFIEAVKQYIEFLCKKGFLRETQKEVYVLNQPAKRSQSLQDLIEKDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=291948 DIC78_RS03805 WP_106020543.1 758784..759935(-) (coiA) [Bacillus halotolerans strain ZB201702]
TTGTTTAGTGCTGTGACAGAAGACGGCCAAGTGTTTCACCTTATAGGCAGGCAGAGGAGAGAACAATTAAAGCAGACCAG
ATTTTTCTGCCCGGTGTGTGCAGAGGAGCTCGATGTGAAGCTAGGGTCTCAGAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCTTGCACGATAGACATAGAACCTGAGAGCGCCTATCACTTAGAAGGAAAACGGCAGCTTTATGTATGGCTGAAA
ACGCAAAAGGCTTCCCCGCTCTTAGAGCCGTACGTGAAAGAGATTAAACAAAGGCCCGACATCTTGGCAAAAGTAAAGGG
GGATACGCTTGCAGTTGAATACCAATGCGCGACTCTCGCTCCAGATGTCTTTCAAAAAAGAACAGCCGGTTTCAAACAAG
CAGGACTGATACCGCAGTGGATTCTTGGAGGCAGCCGCTTAAAACGGACATCATCATCCTTTTACCAGCTGTCCGCTTTC
CATTGGCAGTTTATCAATGCCAGTCCGAACAGTGATCTGTTATGCTACTGCCCCGAAACACATTCTTTCCTGAGGCTCAG
CCGCATGATCCCGTTTTACACAACCCATTTTTACTGCTCCGTCCAAACGATTCCAATCCGCCAGGCAGCGGCTGAAGATT
TATTTTGCACGGAACCAGATTCTTCGTTTAAGCACTCAGATTGGACAGGAGCCATTCTCCGTTTTCGCCGCAAAACTCAT
CGCTTTCTCTCTAAAGATATGAATCGGATCAGGCTTCTGTTTTATGAAAAACGGCAAACACCTCTCTCTTTTCTTCCGAC
AGAGGTGTTTGTTCCTGTAAAGAAAGGAGCTGTTTTTAAGAGCCCCGTTTTTGTATGGCAGGGCTATCTTTATCTGTTTA
TTACGGATCTTGGATATAAACATGCGCCCATTCGTTTTTCAGCCGTTTTGCAGCACTGCAAAATACACATTCATAAAAAG
AACATTTTGCTAAGAGGCGTATACAGGGATCAGGATTTCATTGAGGCGGTTAAACAGTACATTGAGTTTTTGTGCAAGAA
GGGATTTTTGAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCCGCAAAGCGCAGCCAATCATTACAGGATCTCA
TTGAAAAAGACAGAAGCTGTTTTATCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

75.603

97.389

0.736


Multiple sequence alignment