Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DIC78_RS02385 Genome accession   NZ_CP029364
Coordinates   511309..511773 (+) Length   154 a.a.
NCBI ID   WP_044156084.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 506309..516773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS02365 (DIC78_02390) fadH 507494..508258 (-) 765 WP_127695339.1 2,4-dienoyl-CoA reductase -
  DIC78_RS02370 (DIC78_02395) - 508403..509263 (+) 861 WP_127695341.1 metallophosphoesterase -
  DIC78_RS02375 (DIC78_02400) - 509321..509815 (+) 495 WP_081638296.1 L,D-transpeptidase family protein -
  DIC78_RS02380 (DIC78_02405) - 509891..511183 (+) 1293 WP_127695343.1 MFS transporter -
  DIC78_RS02385 (DIC78_02410) kre 511309..511773 (+) 465 WP_044156084.1 YkyB family protein Regulator
  DIC78_RS02390 (DIC78_02415) cheV 511815..512726 (-) 912 WP_024121210.1 chemotaxis protein CheV -
  DIC78_RS02395 (DIC78_02420) - 512934..513095 (+) 162 WP_003238943.1 hypothetical protein -
  DIC78_RS02400 (DIC78_02425) - 513297..514480 (+) 1184 Protein_483 aminotransferase A -
  DIC78_RS02405 (DIC78_02430) kinA 514477..516309 (-) 1833 WP_095714840.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17885.67 Da        Isoelectric Point: 10.3545

>NTDB_id=291944 DIC78_RS02385 WP_044156084.1 511309..511773(+) (kre) [Bacillus halotolerans strain ZB201702]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=291944 DIC78_RS02385 WP_044156084.1 511309..511773(+) (kre) [Bacillus halotolerans strain ZB201702]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACCGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAGAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

98.701

100

0.987

Multiple sequence alignment