Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DIC78_RS02145 Genome accession   NZ_CP029364
Coordinates   467432..467710 (-) Length   92 a.a.
NCBI ID   WP_095714714.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 462432..472710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS02125 (DIC78_02150) ade 462482..464215 (-) 1734 WP_127695319.1 adenine deaminase -
  DIC78_RS02130 (DIC78_02155) ktrC 464372..465037 (-) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  DIC78_RS02135 (DIC78_02160) - 465109..465939 (-) 831 WP_106020369.1 gamma-glutamylcyclotransferase -
  DIC78_RS02140 (DIC78_02165) kinC 465955..467241 (-) 1287 WP_127695321.1 two-component sensor histidine kinase KinC -
  DIC78_RS02145 (DIC78_02170) abrB 467432..467710 (-) 279 WP_095714714.1 transcriptional regulator AbhA Regulator
  DIC78_RS02155 (DIC78_02180) mreBH 467993..469000 (+) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  DIC78_RS02160 (DIC78_02185) - 469103..469234 (+) 132 WP_024121251.1 protein YkpC -
  DIC78_RS02165 (DIC78_02190) - 469348..470580 (+) 1233 WP_044156760.1 aminopeptidase -
  DIC78_RS02170 (DIC78_02195) - 470608..471519 (-) 912 WP_101865186.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10270.09 Da        Isoelectric Point: 5.8872

>NTDB_id=291942 DIC78_RS02145 WP_095714714.1 467432..467710(-) (abrB) [Bacillus halotolerans strain ZB201702]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=291942 DIC78_RS02145 WP_095714714.1 467432..467710(-) (abrB) [Bacillus halotolerans strain ZB201702]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565

Multiple sequence alignment