Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECIAI39_RS01015 Genome accession   NC_011750
Coordinates   231747..232352 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli IAI39     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 226747..237352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI39_RS00995 (ECIAI39_0195) aes 226850..227809 (+) 960 WP_000801813.1 acetyl esterase -
  ECIAI39_RS01000 (ECIAI39_0196) hemH 227806..228768 (-) 963 WP_001250105.1 ferrochelatase -
  ECIAI39_RS01005 (ECIAI39_0197) adk 228900..229544 (-) 645 WP_001313630.1 adenylate kinase -
  ECIAI39_RS01010 (ECIAI39_0198) htpG 229763..231637 (-) 1875 WP_000678196.1 molecular chaperone HtpG -
  ECIAI39_RS01015 (ECIAI39_0199) recR 231747..232352 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECIAI39_RS01020 (ECIAI39_0200) ybaB 232352..232681 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECIAI39_RS01025 (ECIAI39_0201) dnaX 232734..234665 (-) 1932 WP_000122016.1 DNA polymerase III subunit gamma/tau -
  ECIAI39_RS01030 (ECIAI39_0202) apt 234794..235345 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECIAI39_RS01035 (ECIAI39_0203) ybaN 235498..235875 (-) 378 WP_001188905.1 DUF454 family protein -
  ECIAI39_RS01040 (ECIAI39_0204) priC 235945..236472 (+) 528 WP_000844850.1 primosomal replication protein N'' -
  ECIAI39_RS01045 (ECIAI39_0205) rsmS 236486..236647 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=29192 ECIAI39_RS01015 WP_001195025.1 231747..232352(-) (recR) [Escherichia coli IAI39]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=29192 ECIAI39_RS01015 WP_001195025.1 231747..232352(-) (recR) [Escherichia coli IAI39]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment