Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DIW83_RS17475 Genome accession   NZ_CP029351
Coordinates   3596229..3598457 (+) Length   742 a.a.
NCBI ID   WP_016803957.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591229..3603457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS17445 (DIW83_17445) lnt 3591265..3592824 (+) 1560 WP_002156963.1 apolipoprotein N-acyltransferase -
  DIW83_RS17450 (DIW83_17450) - 3592826..3593164 (-) 339 WP_000434938.1 tRNA-binding protein -
  DIW83_RS17455 (DIW83_17455) - 3593405..3593665 (+) 261 WP_004710772.1 DUF2798 domain-containing protein -
  DIW83_RS17460 (DIW83_17460) - 3593726..3594070 (-) 345 WP_016803955.1 hypothetical protein -
  DIW83_RS17465 (DIW83_17465) gspG 3594336..3594851 (-) 516 WP_017398156.1 type II secretion system major pseudopilin GspG -
  DIW83_RS17470 (DIW83_17470) gspF 3594875..3596080 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  DIW83_RS17475 (DIW83_17475) priA 3596229..3598457 (+) 2229 WP_016803957.1 primosomal protein N' Machinery gene
  DIW83_RS17480 (DIW83_17480) - 3598533..3600374 (+) 1842 WP_004710778.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DIW83_RS17485 (DIW83_17485) - 3600540..3601415 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  DIW83_RS17490 (DIW83_17490) - 3601552..3602163 (+) 612 WP_004883506.1 LysE family translocator -
  DIW83_RS17495 (DIW83_17495) - 3602313..3603272 (+) 960 WP_016803958.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83975.83 Da        Isoelectric Point: 8.5653

>NTDB_id=291912 DIW83_RS17475 WP_016803957.1 3596229..3598457(+) (priA) [Acinetobacter nosocomialis strain NCTC 8102]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKVQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAQRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=291912 DIW83_RS17475 WP_016803957.1 3596229..3598457(+) (priA) [Acinetobacter nosocomialis strain NCTC 8102]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGTACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGATCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTGATGCAAACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTGTTATTTCATTTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTGCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTTAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCGTTTTTGTTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTATTGGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGCTTAAATGACTCGA
AGCGCTTACAAGCATGGCAACAGGCACAGACTGGAAAAGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAGCACGATCTGTCTTATAAACAACAAGAAGGCTTTCGTTACCATGC
GCGTGATGTCGCGCTTTACCGCGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACGGTT
CATCGCTTGCCAGACCACTGCCCTGAATGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTTGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCAAAGCAAACATTGGCTGAACGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTAATACGCGCTGAATCGAAAGATCGCGATTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAATTGCAGGTGATATTGTTGATATCTGGGGGCCAATTCCCGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCAAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98

Multiple sequence alignment