Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DIW83_RS02355 Genome accession   NZ_CP029351
Coordinates   478469..479353 (+) Length   294 a.a.
NCBI ID   WP_016804769.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473469..484353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS02330 (DIW83_02330) - 473861..475108 (-) 1248 WP_002050751.1 YihY family inner membrane protein -
  DIW83_RS02335 (DIW83_02335) wrbA 475389..475991 (+) 603 WP_185126661.1 NAD(P)H:quinone oxidoreductase -
  DIW83_RS02340 (DIW83_02340) - 476046..476621 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  DIW83_RS02345 (DIW83_02345) - 476693..477406 (-) 714 WP_002050776.1 DUF3108 domain-containing protein -
  DIW83_RS02350 (DIW83_02350) - 477564..478235 (-) 672 WP_016804770.1 hypothetical protein -
  DIW83_RS02355 (DIW83_02355) tonB2 478469..479353 (+) 885 WP_016804769.1 energy transducer TonB Machinery gene
  DIW83_RS02360 (DIW83_02360) ybeY 479443..479919 (-) 477 WP_004711856.1 rRNA maturation RNase YbeY -
  DIW83_RS02365 (DIW83_02365) - 479929..481017 (-) 1089 WP_002050786.1 PhoH family protein -
  DIW83_RS02370 (DIW83_02370) miaB 481055..482506 (-) 1452 WP_016804768.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33674.52 Da        Isoelectric Point: 9.4514

>NTDB_id=291893 DIW83_RS02355 WP_016804769.1 478469..479353(+) (tonB2) [Acinetobacter nosocomialis strain NCTC 8102]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFILLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDTSTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDTNMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=291893 DIW83_RS02355 WP_016804769.1 478469..479353(+) (tonB2) [Acinetobacter nosocomialis strain NCTC 8102]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTTTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTATACTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATACTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAGGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCCTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCGTTTGGTCGTTTTGA
TACAAATATGAAGGATATTTCCGAGCTACGTATTGTGCGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946

Multiple sequence alignment