Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC55989_RS23655 Genome accession   NC_011748
Coordinates   4749752..4750228 (-) Length   158 a.a.
NCBI ID   WP_001387238.1    Uniprot ID   -
Organism   Escherichia coli 55989     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4744752..4755228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC55989_RS30020 - 4746445..4746559 (-) 115 Protein_4514 integrase -
  EC55989_RS23625 (EC55989_4628) - 4746934..4747776 (-) 843 WP_001290187.1 DUF4942 domain-containing protein -
  EC55989_RS23630 - 4747861..4748058 (-) 198 WP_000772029.1 DUF957 domain-containing protein -
  EC55989_RS23635 (EC55989_4630) - 4748078..4748566 (-) 489 WP_000761715.1 DUF5983 family protein -
  EC55989_RS23640 (EC55989_4631) - 4748563..4748940 (-) 378 WP_001094430.1 TA system toxin CbtA family protein -
  EC55989_RS23645 (EC55989_4632) cbeA 4748987..4749364 (-) 378 WP_001285620.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EC55989_RS23650 (EC55989_4634) - 4749444..4749665 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  EC55989_RS23655 (EC55989_4635) radC 4749752..4750228 (-) 477 WP_001387238.1 RadC family protein Machinery gene
  EC55989_RS23660 - 4750244..4750717 (-) 474 WP_000855057.1 antirestriction protein -
  EC55989_RS29340 - 4751059..4751184 (-) 126 Protein_4523 DUF945 domain-containing protein -
  EC55989_RS29040 - 4751241..4751980 (+) 740 Protein_4524 IS3 family transposase -
  EC55989_RS23680 (EC55989_4639) ltrA 4752653..4754161 (+) 1509 WP_001189118.1 group II intron reverse transcriptase/maturase -
  EC55989_RS23685 (EC55989_4640) - 4754245..4754724 (+) 480 Protein_4526 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17740.41 Da        Isoelectric Point: 7.2519

>NTDB_id=29186 EC55989_RS23655 WP_001387238.1 4749752..4750228(-) (radC) [Escherichia coli 55989]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29186 EC55989_RS23655 WP_001387238.1 4749752..4750228(-) (radC) [Escherichia coli 55989]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCCCCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment